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Center for Computational and Theoretical Biology

Prof. Dr. Philip Kollmannsberger

Junior Professor "Computational Image Analysis"

Center for Computational and Theoretical Biology (CCTB)
University of Würzburg
Campus Hubland Nord 32
97074 Würzburg, Germany
Tel: 0931 - 31 82375

eMail: philip.kollmannsberger@uni-wuerzburg.de

Sprechstunde: nach Vereinbarung

orcid.org/0000-0002-8049-6186

    

 

 

Curriculum Vitae

since 03/2016


Assistant Professor (Juniorprofessor)
Center for Computational and Theoretical Biology (CCTB)
University of Würzburg, Germany
03/2012 - 02/2016

Postdoc and Lecturer
ETH Zürich, Laboratory of Applied Mechanobiology (Viola Vogel)
01/2010 - 12/2011


Postdoc
Max Planck Institute of Colloids and Interfaces, Golm, Germany
Department of Biomaterials (Peter Fratzl)
12/2009
PhD in Physics
09/2006 - 11/2006 and
03/2007 - 05/2007

Visiting Researcher
Scripps Institute, La Jolla, USA
Department of Cell Biology (Waterman/Danuser)
10/2004 - 10/2009


Research Assistant and PhD Student
University of Erlangen, Germany
Center for Medical Physics and Technology (Ben Fabry)
02/2004
Diploma in Physics
05/2001 - 02/2004

Student of Physics (Diplom)
University of Erlangen, Germany
09/2000 - 04/2001

ERASMUS fellow
University of Joensuu, Finland
11/1998 - 08/2000

Student of Physics (Vordiplom)
University of Erlangen, Germany

Publications

[ 2019 ] [ 2018 ] [ 2017 ] [ 2016 ] [ 2015 ] [ 2014 ] [ 2013 ] [ 2012 ] [ 2011 ] [ 2010 ] [ 2009 ] [ 2008 ] [ 2007 ]

2019 [ nach oben ]

  • Weinkamer, R., Kollmannsberger, P., Fratzl, P. (2019) “Towards a Connectomic Description of the Osteocyte Lacunocanalicular Network in Bone”, Current Osteoporosis Reports, available: https://doi.org/10.1007/s11914-019-00515-z.
     
  • Pauli, M., Paul, M.M., Proppert, S., Sharifi, M., Repp, F., Kollmannsberger, P., Sauer, M., Heckmann, M., Sirén, A.-L. (2019) “Targeted volumetric single-molecule localization microscopy of defined presynaptic structures in brain sections”, bioRxiv, available: http://biorxiv.org/lookup/doi/10.1101/568279.
     
  • Mostosi, P., Schindelin, H., Kollmannsberger, P., Thorn, A. (2019) “Automated interpretation of Cryo-EM density maps with convolutional neural networks”, bioRxiv, 644476, available: https://www.biorxiv.org/content/10.1101/644476v1.
     

2018 [ nach oben ]

  • Kollmannsberger, P., Bidan, C.M., Dunlop, J., Fratzl, P., Vogel, V. (2018) “Tensile forces drive a reversible fibroblast-to-myofibroblast transition during tissue growth in engineered clefts”, Science Advances, 4(1), eaao4881.
     
  • Ehrig, S., Bidan, C.M., West, A., Jacobi, C., Lam, K., Kollmannsberger, P., Petersen, A., Tomancak, P., Kommareddy, K., Fischer, F.D., Fratzl, P., Dunlop, J.W.C. (2018) “Surface tension determines tissue shape and growth kinetics”, bioRxiv, available: http://biorxiv.org/lookup/doi/10.1101/456228.
     
  • Kaltdorf, K.V., Theiss, M., Markert, S.M., Zhen, M., Dandekar, T., Stigloher, C., Kollmannsberger, P. (2018) “Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning”, PLoS one, 13(10), e0205348, available: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205348.
     

2017 [ nach oben ]

  • Kollmannsberger, P., Kerschnitzki, M., Repp, F., Wagermaier, W., Weinkamer, R., Fratzl, P. (2017) “The Small World of Osteocytes: Connectomics of the Lacuno-Canalicular Network in Bone.”, New Journal of Physics, 19, 073019.
     
  • Repp, F., Kollmannsberger, P., Roschger, A., Kerschnitzki, M., Berzlanovich, A., Gruber, G.M., Roschger, P., Wagermaier, W., Weinkamer, R. (2017) “Spatial heterogeneity in the canalicular density of the osteocyte network in human osteons”, Bone Reports, 6, 101-108.
     
  • Kaltdorf, K.V., Schulze, K., Helmprobst, F., Kollmannsberger, P., Dandekar, T., Stigloher, C. (2017) “FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms”, PLOS Computational Biology, 13(1), 1-21, available: http://dx.doi.org/10.1371%2Fjournal.pcbi.1005317.
     
  • Repp, F., Kollmannsberger, P., Roschger, A., Berzlanovich, A., Gruber, G., Roschger, P., Wagermaier, W., Weinkamer, R. (2017) “Coalignment of osteocyte canaliculi and collagen fibers in human osteonal bone”, Journal of Stuctural Biology, 199, 177-186.
     

2016 [ nach oben ]

  • Avalos Vizcarra, I., Hosseini, V., Kollmannsberger, P., Meier, S., Weber, S.S., Arnoldini, M., Ackermann, M., Vogel, V. (2016) “How type 1 fimbriae help Escherichia coli to evade extracellular antibiotics”, Scientific Reports, 6, 18109, available: http://dx.doi.org/10.1038/srep18109.
     
  • Bidan, C.M., Kollmannsberger, P., Gering, V., Ehrig, S., Joly, P., Petersen, A., Vogel, V., Fratzl, P., Dunlop, J.W.C. (2016) “Gradual conversion of cellular stress patterns into pre-stressed matrix architecture during in vitro tissue growth”, Journal of The Royal Society Interface, 13(118), available: http://rsif.royalsocietypublishing.org/content/13/118/20160136.
     
  • Yamashita, T., Kollmannsberger, P., Mawatari, K., Kitamori, T., Vogel, V. (2016) “Cell sheet mechanics: How geometrical constraints induce the detachment of cell sheets from concave surfaces”, Acta Biomaterialia, 45, 85 - 97, available: http://www.sciencedirect.com/science/article/pii/S1742706116304408.
     

2015 [ nach oben ]

  • Foolen, J., Yamashita, T., Kollmannsberger, P. (2015) “Shaping tissues by balancing active forces and geometric constraints”, Journal of Physics D: Applied Physics, 49(5), 053001.
     

2014 [ nach oben ]

  • Hosseini, V., Kollmannsberger, P., Ahadian, S., Ostrovidov, S., Kaji, H., Vogel, V., Khademhosseini, A. (2014) “Fiber-Assisted Molding (FAM) of Surfaces with Tunable Curvature to Guide Cell Alignment and Complex Tissue Architecture”, Small, 10(23), 4851--4857.
     

2013 [ nach oben ]

  • Lukas, C., Ruffoni, D., Lambers, F.M., Schulte, F.A., Kuhn, G., Kollmannsberger, P., Weinkamer, R., Müller, R. (2013) “Mineralization kinetics in murine trabecular bone quantified by time-lapsed in vivo micro-computed tomography”, Bone, 56(1), 55--60.
     
  • Bidan, C.M., Kommareddy, K.P., Rumpler, M., Kollmannsberger, P., Fratzl, P., Dunlop, J.W.C. (2013) “Geometry as a factor for tissue growth: towards shape optimization of tissue engineering scaffolds”, Advanced healthcare materials, 2(1), 186--194.
     
  • Yamashita, T., Kollmannsberger, P., Mawatari, K., Vogel, V., Kitamori, T. (2013) “Curvature-induced spontaneous detachment of vascular smooth muscle cell sheets: towards vascular self assembly in microchannels”, Microsystem Technology in Chemistry and Life Science.
     
  • Möller, J., Emge, P., Vizcarra, I.A., Kollmannsberger, P., Vogel, V. (2013) “Bacterial filamentation accelerates colonization of adhesive spots embedded in biopassive surfaces”, New Journal of Physics, 15(12), 125016.
     
  • Kerschnitzki, M., Kollmannsberger, P., Burghammer, M., Duda, G.N., Weinkamer, R., Wagermaier, W., Fratzl, P. (2013) “Architecture of the osteocyte network correlates with bone material quality”, Journal of Bone and Mineral Research, 28(8), 1837--1845.
     

2012 [ nach oben ]

  • Bidan, C.M., Kommareddy, K.P., Rumpler, M., Kollmannsberger, P., Bréchet, Y.J.M., Fratzl, P., Dunlop, J.W.C. (2012) “How Linear Tension Converts to Curvature: Geometric Control of Bone Tissue Growth”, PloS one, 7(5), e36336.
     

2011 [ nach oben ]

  • Kollmannsberger, P., Bidan, C.M., Dunlop, J.W.C., Fratzl, P. (2011) “The physics of tissue patterning and extracellular matrix organisation: how cells join forces”, Soft Matter, 7(20), 9549--9560.
     
  • Lukas, C., Kollmannsberger, P., Ruffoni, D., Roschger, P., Fratzl, P., Weinkamer, R. (2011) “The Heterogeneous Mineral Content of Bone—Using Stochastic Arguments and Simulations to Overcome Experimental Limitations”, Journal of Statistical Physics, 144(2), 316--331.
     
  • Kollmannsberger, P., Mierke, C.T., Fabry, B. (2011) “Nonlinear viscoelasticity of adherent cells is controlled by cytoskeletal tension”, Soft Matter, 7(7), 3127--3132.
     
  • Kollmannsberger, P., Fabry, B. (2011) “Linear and nonlinear rheology of living cells”, Annual Review of Materials Research, 41, 75--97.
     

2010 [ nach oben ]

  • Mierke, C.T., Kollmannsberger, P., Zitterbart, D.P., Diez, G., Koch, T.M., Marg, S., Ziegler, W.H., Goldmann, W.H., Fabry, B. (2010) “Vinculin facilitates cell invasion into three-dimensional collagen matrices”, Journal of Biological Chemistry, 285(17), 13121--13130.
     

2009 [ nach oben ]

  • Kasza, K.E., Nakamura, F., Hu, S., Kollmannsberger, P., Bonakdar, N., Fabry, B., Stossel, T.P., Wang, N., Weitz, D.A. (2009) “Filamin A is essential for active cell stiffening but not passive stiffening under external force”, Biophysical journal, 96(10), 4326--4335.
     
  • Lorenz, C., Brunner, J.G., Kollmannsberger, P., Jaafar, L., Fabry, B., Virtanen, S. (2009) “Effect of surface pre-treatments on biocompatibility of magnesium”, Acta biomaterialia, 5(7), 2783--2789.
     
  • Diez, G., Kollmannsberger, P., Mierke, C.T., Koch, T.M., Vali, H., Fabry, B., Goldmann, W.H. (2009) “Anchorage of vinculin to lipid membranes influences cell mechanical properties”, Biophysical journal, 97(12), 3105--3112.
     
  • Kollmannsberger, P., Fabry, B. (2009) “Active soft glassy rheology of adherent cells”, Soft Matter, 5(9), 1771--1774.
     

2008 [ nach oben ]

  • Rösel, D., Brábek, J., Tolde, O., Mierke, C.T., Zitterbart, D.P., Raupach, C., Bicanová, K.`yna, Kollmannsberger, P., Pavnková, D., Vesel`y, P., others, (2008) “Up-regulation of Rho/ROCK signaling in sarcoma cells drives invasion and increased generation of protrusive forces”, Molecular Cancer Research, 6(9), 1410--1420.
     
  • Mierke, C.T., Kollmannsberger, P., Paranhos Zitterbart, D., Smith, J., Fabry, B., Goldmann, W.H. (2008) “Mechano-coupling and regulation of contractility by the vinculin tail domain”, Biophysical journal, 94(2), 661--670.
     
  • Mierke, C.T., Zitterbart, D.P., Kollmannsberger, P., Raupach, C., Schlötzer-Schrehardt, U., Goecke, T.W., Behrens, J., Fabry, B. (2008) “Breakdown of the endothelial barrier function in tumor cell transmigration”, Biophysical journal, 94(7), 2832--2846.
     

2007 [ nach oben ]

  • Kollmannsberger, P., Fabry, B. (2007) “High-force magnetic tweezers with force feedback for biological applications”, Review of Scientific Instruments, 78(11), 114301--114301.