Publications
Preprints
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DeepCLEM: automated registration for correlative light and electron microscopy using deep learning [version 1; peer review: awaiting peer review]. in F1000Research (2020). 9(1275)
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Active zone compaction for presynaptic strength. in bioRxiv (2019).
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Targeted volumetric single-molecule localization microscopy of defined presynaptic structures in brain sections. in bioRxiv (2019).
Publications
2020
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Haruspex: A Neural Network for the Automatic Identification of Oligonucleotides and Protein Secondary Structure in Cryo-Electron Microscopy Maps. in Angewandte Chemie International Edition (2020). n/a(n/a)
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Biological network growth in complex environments – a computational framework. in PLOS Computational Biology (2020). 16(11) e1008003.
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Efficient Classification of White Blood Cell Leukemia with Improved Swarm Optimization of Deep Features. in Scientific Reports (2020). 10(1) 2536.
2019
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Electron tomography of mouse LINC complexes at meiotic telomere attachment sites with and without microtubules. in Communications Biology (2019). 2(1) 376--.
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Surface tension determines tissue shape and growth kinetics. in Science Advances (2019). 5(9) eaav9394.
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Towards a Connectomic Description of the Osteocyte Lacunocanalicular Network in Bone. in Current Osteoporosis Reports (2019).
2018
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Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning. in PLoS one (2018). 13(10) e0205348.
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Tensile forces drive a reversible fibroblast-to-myofibroblast transition during tissue growth in engineered clefts. in Science Advances (2018). 4(1) eaao4881.
2017
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Spatial heterogeneity in the canalicular density of the osteocyte network in human osteons. in Bone Reports (2017). 6 101-108.[ BibTeX ]
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Coalignment of osteocyte canaliculi and collagen fibers in human osteonal bone. in Journal of Stuctural Biology (2017). 199 177-186.
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The Small World of Osteocytes: Connectomics of the Lacuno-Canalicular Network in Bone. in New Journal of Physics (2017). 19 073019.
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FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms. in PLOS Computational Biology (2017). 13(1) 1-21.
2016
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Gradual conversion of cellular stress patterns into pre-stressed matrix architecture during in vitro tissue growth. in Journal of The Royal Society Interface (2016). 13(118)
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Cell sheet mechanics: How geometrical constraints induce the detachment of cell sheets from concave surfaces. in Acta Biomaterialia (2016). 45 85 - 97.
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How type 1 fimbriae help Escherichia coli to evade extracellular antibiotics. in Scientific Reports (2016). 6 18109.
2015
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Shaping tissues by balancing active forces and geometric constraints. in Journal of Physics D: Applied Physics (2015). 49(5) 053001.[ BibTeX ]
2014
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Fiber-Assisted Molding (FAM) of Surfaces with Tunable Curvature to Guide Cell Alignment and Complex Tissue Architecture. in Small (2014). 10(23) 4851--4857.[ BibTeX ]
2013
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Bacterial filamentation accelerates colonization of adhesive spots embedded in biopassive surfaces. in New Journal of Physics (2013). 15(12) 125016.[ BibTeX ]
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Curvature-induced spontaneous detachment of vascular smooth muscle cell sheets: towards vascular self assembly in microchannels. in Microsystem Technology in Chemistry and Life Science (2013).[ BibTeX ]
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Mineralization kinetics in murine trabecular bone quantified by time-lapsed in vivo micro-computed tomography. in Bone (2013). 56(1) 55--60.[ BibTeX ]
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Architecture of the osteocyte network correlates with bone material quality. in Journal of Bone and Mineral Research (2013). 28(8) 1837--1845.[ BibTeX ]
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Geometry as a factor for tissue growth: towards shape optimization of tissue engineering scaffolds. in Advanced healthcare materials (2013). 2(1) 186--194.[ BibTeX ]
2012
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How Linear Tension Converts to Curvature: Geometric Control of Bone Tissue Growth. in PloS one (2012). 7(5) e36336.[ BibTeX ]
2011
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The physics of tissue patterning and extracellular matrix organisation: how cells join forces. in Soft Matter (2011). 7(20) 9549--9560.[ BibTeX ]
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Nonlinear viscoelasticity of adherent cells is controlled by cytoskeletal tension. in Soft Matter (2011). 7(7) 3127--3132.[ BibTeX ]
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The Heterogeneous Mineral Content of Bone—Using Stochastic Arguments and Simulations to Overcome Experimental Limitations. in Journal of Statistical Physics (2011). 144(2) 316--331.[ BibTeX ]
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Linear and nonlinear rheology of living cells. in Annual Review of Materials Research (2011). 41 75--97.[ BibTeX ]
2010
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Vinculin facilitates cell invasion into three-dimensional collagen matrices. in Journal of Biological Chemistry (2010). 285(17) 13121--13130.[ BibTeX ]
2009
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Anchorage of vinculin to lipid membranes influences cell mechanical properties. in Biophysical journal (2009). 97(12) 3105--3112.[ BibTeX ]
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Active soft glassy rheology of adherent cells. in Soft Matter (2009). 5(9) 1771--1774.[ BibTeX ]
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Filamin A is essential for active cell stiffening but not passive stiffening under external force. in Biophysical journal (2009). 96(10) 4326--4335.[ BibTeX ]
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Effect of surface pre-treatments on biocompatibility of magnesium. in Acta biomaterialia (2009). 5(7) 2783--2789.[ BibTeX ]
2008
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Breakdown of the endothelial barrier function in tumor cell transmigration. in Biophysical journal (2008). 94(7) 2832--2846.[ BibTeX ]
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Up-regulation of Rho/ROCK signaling in sarcoma cells drives invasion and increased generation of protrusive forces. in Molecular Cancer Research (2008). 6(9) 1410--1420.[ BibTeX ]
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Mechano-coupling and regulation of contractility by the vinculin tail domain. in Biophysical journal (2008). 94(2) 661--670.[ BibTeX ]
2007
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High-force magnetic tweezers with force feedback for biological applications. in Review of Scientific Instruments (2007). 78(11) 114301--114301.[ BibTeX ]