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    Center for Computational and Theoretical Biology

    Markus Ankenbrand

    PhD student

    Tel: 0931 31-8575

    eMail: markus.ankenbrand@uni-wuerzburg.de

     

    Research

    I’m a PhD student of life sciences at the University of Würzburg. As a fellow of the Graduate School of Life Sciences I started my PhD in July 2014.

    My research interests are the development and application of algorithms, tools and workflows to generate knowledge from biological data. I want to use the vast amount of publicly available data and software to unravel some of life’s mysteries. I believe in open source, open data, open science and reproducible research. Currently my focus is on genomics and molecular biodiversity.

    Publications

    [ 2018 ] [ 2016 ] [ 2015 ] [ 2013 ]

    2018[ to top ]

    • Wild bees and their nests host Paenibacillus bacteria with functional potential of avail.Keller, Alexander; Brandel, Annette; Becker, Mira C.; Balles, Rebecca; Abdelmohlsen, Usama R.; Ankenbrand, Markus J.; Sickel, Wiebke in Microbiome (2018). (6) 229.
       
    • FENNEC - Functional Exploration of Natural Networks and Ecological Communities.Ankenbrand, Markus J.; Hohlfeld, Sonja C. Y.; Foerster, Frank; Keller, Alexander in Methods in Ecology and Evolution (2018). 2028–2033.
       
    • Draft Genome Sequence of Paraburkholderia sp. Strain C35, Isolated from a Malaysian Tropical Peat Swamp Forest.Too, Chin Chin; Ong, Kuan Shion; Ankenbrand, Markus J; Lee, Sui Mae; Yule, Catherine M; Keller, Alexander in Genome announcements (2018). 6(25) e00561--18.
       
    • Draft Genome Sequence of Klebsiella sp. Strain C31 Isolated from a Malaysian Tropical Peat Swamp Forest.Too, Chin Chin; Ong, Kuan Shion; Ankenbrand, Markus J; Lee, Sui Mae; Yule, Catherine M; Keller, Alexander in Genome announcements (2018). 6(25) e00560--18.
       
    • chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data.Ankenbrand, Markus J; Pfaff, Simon; Terhoeven, Niklas; Qureischi, Musga; Gündel, Maik; Weiß, Clemens L.; Hackl, Thomas; Förster, Frank in The Journal of Open Source Software (2018). 3(21) 464.
       

    2016[ to top ]

    • Venus flytrap carnivorous lifestyle builds on herbivore defense strategies.Bemm, F.; Becker, D.; Larisch, C.; Kreuzer, I.; Escalante-Perez, M.; Schulze, W. X.; Ankenbrand, M.; Van de Weyer, A. L.; Krol, E.; Al-Rasheid, K. A.; Mithofer, A.; Weber, A. P.; Schultz, J.; Hedrich, R. in Genome Res. (2016). 26(6) 812--825.
       
    • TBro: visualization and management of de novo transcriptomes.Ankenbrand, Markus J.; Weber, Lorenz; Becker, Dirk; Förster, Frank; Bemm, Felix in Database (2016). 2016
       
    • DNA-Metabarcoding – ein neuer Blick auf organismische Diversität.Keller, Alexander; Grimmer, Gudrun; Sickel, Wiebke; Ankenbrand, Markus J in BioSpektrum (2016). 22 147-150.
       
    • biojs-io-biom, a BioJS component for handling data in Biological Observation Matrix (BIOM) format.Ankenbrand, Markus J.; Terhoeven, Niklas; Hohlfeld, Sonja; Förster, Frank; Keller, Alexander in F1000Research (2016). 5 2348.
       
    • bcgTree: automatized phylogenetic tree building from bacterial core genomes.Ankenbrand, Markus J; Keller, Alexander in Genome (2016). 59 783-791.
       

    2015[ to top ]

    • ITS2 Database V: Twice as Much.Ankenbrand, M. J.; Keller, A.; Wolf, M.; Schultz, J.; Forster, F. in Mol. Biol. Evol. (2015). 32(11) 3030--3032.
       
    • ITS2 Database V: Twice as Much.Ankenbrand, Markus J.; Keller, Alexander; Wolf, Matthias; Schultz, Jörg; Förster, Frank in Molecular Biology and Evolution (2015). 32(11) 3030-3032.
       
    • Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach.Sickel, Wiebke; Ankenbrand, Markus; Grimmer, Gudrun; Holzschuh, Andrea; Härtel, Stephan; Lanzen, Jonathan; Steffan-Dewenter, Ingolf; Keller, Alexander in BMC Ecology (2015). 15 20.
       
    • Evaluating multiplexed next-generation sequencing as a method in palynology for mixed pollen samples.Keller, Alexander; Danner, Nadja; Grimmer, Gudrun; Ankenbrand, Markus; von der Ohe, Katharina; von der Ohe, Werner; Rost, Simone; Härtel, Stephan; Steffan-Dewenter, Ingolf in Plant Biology (2015). 17 558-566.
       

    2013[ to top ]

    • Compensatory Base Changes in ITS2 Secondary Structures Correlate with the Biological Species Concept Despite Intragenomic Variability in ITS2 Sequences textendash A Proof of Concept.Wolf, Matthias; Chen, Shilin; Song, Jingyuan; Ankenbrand, Markus; Müller, Tobias in PLoS ONE, (J. E. Stajich, red.) (2013). 8(6) e66726.
       
    Contact

    Center for Computational and Theoretical Biology
    Klara-Oppenheimer-Weg 32
    Campus Hubland Nord
    97074 Würzburg

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