Lecture 5: Results


1. MotifMap
- 3 entries for E2F1
- the sequence logo shows the eight bases long consensus sequence for the DNA binding site of E2F1. Here, the first three positions are highly conserved thymine bases.
- 387 binding sites are listed for E2F1


3. Promotor analysis
-  a promotor is found which starts at position 868, ends at position 881 and consists of the sequence TTGACGCAAGTCAC


4. STRING - BluF
- BluF binds to and releases the BluR repressor from its bound DNA target in a blue-light activated manner
- BluF also may serve as thermometer
- activation of BluF triggers the binding to the BluR repressor leading to the loss of its repressor function
- the transcriptional repressor BluR represses the operator of the ycgZ-ymgA-ariR-ymgC operon and also regulates ynaK and controls the expression of proteins involved in biofilm regulation