Publications

• [ submitted ]
• [ 2023 ]
• [ 2022 ]
• [ 2021 ]
• [ 2020 ]
• [ 2019 ]
• [ 2018 ]
• [ 2017 ]
• [ 2016 ]
• [ 2015 ]
• [ 2013 ]

• Dryland resilience to aridity is associated with self-organized vegetation patchiness Kéfi, Sonia; Génin, Alexandre; Garcia-Mayor, Angeles; Guirado, Emilio; Cabral, Juliano S.; Berdugo, Miguel; Guerber, Josquin; Solé, Ricard; T. Maestre, Fernando (submitted).
• Formative Integration of Julia Code into the Unity Game Engine:The Use Case of Diving into Aquatic Plant Growth Lewerentz, Anne; Manke, Nico; Schantz, David; Cabral, Juliano S.; von Mammen, Sebastian (submitted).

• Insights into the relationship between hydraulic safety, hydraulic efficiency and tree structural complexity from terrestrial laser scanning and fractal analysis Dorji, Yonten; Isasa, Emilie; Sarmento Cabral, Juliano; Schuldt, Bernhard; Annighöfer, Peter; Seidel, Dominik in Researchsquare (2023). Preprint
• Inter- and intraspecific phytochemical variation correlate with epiphytic flower and leaf bacterial communities Gaube, Paul; Marchenko, Polina; Müller, Caroline; Schweiger, Rabea; Tenhaken, Raimund; Keller, Alexander; Junker, Robert R. in Environmental Microbiology (2023).
• MyoPS: A benchmark of myocardial pathology segmentation combining three-sequence cardiac magnetic resonance images Li, Lei; Wu, Fuping; Wang, Sihan; Luo, Xinzhe; Martín-Isla, Carlos; Zhai, Shuwei; Zhang, Jianpeng; Liu, Yanfei; Zhang, Zhen; Ankenbrand, Markus J.; Jiang, Haochuan; Zhang, Xiaoran; Wang, Linhong; Arega, Tewodros Weldebirhan; Altunok, Elif; Zhao, Zhou; Li, Feiyan; Ma, Jun; Yang, Xiaoping; Puybareau, Elodie; Oksuz, Ilkay; Bricq, Stephanie; Li, Weisheng; Punithakumar, Kumaradevan; Tsaftaris, Sotirios A.; Schreiber, Laura M.; Yang, Mingjing; Liu, Guocai; Xia, Yong; Wang, Guotai; Escalera, Sergio; Zhuang, Xiahai in Medical Image Analysis (2023). 102808.
• Novel integrative elements and genomic plasticity in ocean ecosystems Hackl, Thomas; Laurenceau, Raphaël; Ankenbrand, Markus J.; Bliem, Christina; Cariani, Zev; Thomas, Elaina; Dooley, Keven D.; Arellano, Aldo A.; Hogle, Shane L.; Berube, Paul; Leventhal, Gabriel E.; Luo, Elaine; Eppley, John M.; Zayed, Ahmed A.; Beaulaurier, John; Stepanauskas, Ramunas; Sullivan, Matthew B.; DeLong, Edward F.; Biller, Steven J.; Chisholm, Sallie W. in Cell (2023). 186(1) 47–62.e16.
• Ten (mostly) simple rules to future-proof trait data in ecological and evolutionary sciences Keller, Alexander; Ankenbrand, Markus J.; Bruelheide, Helge; Dekeyzer, Stefanie; Enquist, Brian J.; Erfanian, Mohammad Bagher; Falster, Daniel S.; Gallagher, Rachael V.; Hammock, Jennifer; Kattge, Jens; Leonhardt, Sara D.; Madin, Joshua S.; Maitner, Brian; Neyret, Margot; Onstein, Renske E.; Pearse, William D.; Poelen, Jorrit H.; Salguero-Gomez, Roberto; Schneider, Florian D.; Tóth, Anikó B.; Penone, Caterina in Methods in Ecology and Evolution, (K. Bacon, ed.) (2023). 14(2) 444–458.
• The road to integrate climate change effects on land-use change in regional biodiversity models Sarmento Cabral, Juliano; Mendoza-Ponce, Alma; da Silva, André Pinto; Oberpriller, Johannes; Mimet, Anne; Kieslinger, Julia; Berger, Thomas; Blechschmidt, Jana; Brönner, Maximilian; Classen, Alice; Fallert, Stefan; Hartig, Florian; Hof, Christian; Hoffmann, Markus; Knoke, Thomas; Krause, Andreas; Lewerentz, Anne; Pohle, Perdita; Raeder, Uta; Rammig, Anja; Redlich, Sarah; Rubanschi, Sven; Stetter, Christian; Weisser, Wolfgang; Vedder, Daniel; Verburg, Peter H.; Zurell, Damaris in People & Nature (2023). accepted
• The salt-and-pepper pattern in mouse blastocysts is compatible with signalling beyond the nearest neighbours. Fischer, Sabine; Schardt, Simon; Lilao-Garzon, Joaquin; Munoz-Descalzo, Silvia in bioRxiv (2023). 2023.05.04.539359.
• User-Centered Engineering of an Interactive Land Use Exploration Tool Buhl, Tobias; Marcomin, David; Fallert, Stefan; Blechschmidt, Jana; Bönisch, Franziska; Mark, Robert; Cabral, Juliano S.; von Mammen, Sebastian in Workshop on Visualisation in Environmental Sciences (EnvirVis) (2023).

• A data-driven semantic segmentation model for direct cardiac functional analysis based on undersampled radial MR cine series Wech, Tobias; Ankenbrand, Markus Johannes; Bley, Thorsten Alexander; Heidenreich, Julius Frederik in Magnetic Resonance in Medicine (2022). 87(2) 972–983.
• Adjusting the range of cell-cell communication enables fine-tuning of cell fate patterns from checkerboard to engulfing Schardt, Simon; Fischer, Sabine C. in arXiv (2022). 2211.07241.
• Are chromosome number and genome size associated with habit and environmental niche variables? Insights from the Neotropical orchids Moraes, Ana Paula; Engel, Thaissa; Forni-Martins, Eliana; Felix, Leonardo; Cabral, Juliano in Annals of Botany (2022). 130 11–25.
• Critical links between biodiversity, nutrition and health in wild bee conservation Parreno, M.A.; Alaux, C.; Brunet, J.-L.; Butschkau, S.; Buydens, L.; Filipiak, M.; Henry, M.; Keller, Alexander; Klein, A.-M.; Kuhlmann, M; Leroy, C.; Meeus, I; Palmer-Young, E; Piot, N.; Requier, F.; Ruedenauer, F.; Smagghe, G.; Stevenson, P.C; Leonhardt, S.D. in Trends in Ecology and Evolution (2022). in press.
• Efficient permutation-based genome-wide association studies for normal and skewed phenotypic distributions John, Maura; Ankenbrand, Markus J; Artmann, Carolin; Freudenthal, Jan A; Korte, Arthur; Grimm, Dominik G in Bioinformatics (2022). 38(Supplement\_2) ii5-ii12.
• Forest landscapes increase diversity of honeybee diets in the tropics Cannizzaro, Chris; Keller, Alexander; Wilson, Rachele S.; Elliott, Brittany; Newis, Ryan; Ovah, Raywin; Inae, Kelly; Kerlin, Douglas H.; Bar, Ido; Kämper, Wiebke; Shapcott, Alison; Wallace, Helen M. in Forest Ecology and Management (2022). in press.
• In Vitro Rearing Changes Social Task Performance and Physiology in Honeybees Schilcher, Felix; Hilsmann, Lioba; Rauscher, Lisa; Değirmenci, Laura; Krischke, Markus; Krischke, Beate; Ankenbrand, Markus; Rutschmann, Benjamin; Mueller, Martin J.; Steffan-Dewenter, Ingolf; Scheiner, Ricarda in Insects (2022). 13(1)
• Interactive, Visual Simulation of a Spatio-Temporal Model of Gas Exchange in the Human Alveolus Schmid, Kerstin; Knote, Andreas; Mück, Alexander; Pfeiffer, Keram; von Mammen, Sebastian; Fischer, Sabine C. in Frontiers in Bioinformatics (2022).
• New proposal of epiphytic Bromeliaceae functional groups to include nebulophytes and shallow tanks Reyes-García, Casandra; Pereira-Zaldívar, Narcy Anai; Espadas-Manrique, Celene; Tamayo-Chim, Manuela; Chilpa-Galván, Nahlleli Civi; Cach-Pérez, Manuel Jesús; Ramírez-Medina, Marypaz; Benavides, Ana María; Hietz, Peter; Zotz, Gerhard; Andrade, José Luis; Cardelús, Catherine; Oliveiras, Rodolfo De Paula; Einzmann, Helena J.R.; Guzmán Jacob, Valeria; Krömer, Thorsten; Pinzón, Juan Pablo; Sarmento Cabral, Juliano; Wanek, Wolfgang; Woods, Carrie in Plants (2022). accepted.
• Phylogenetic relatedness of food plants reveals highest insect herbivore specialisation at intermediate temperatures along a broad climatic gradient König, Sebastian; Krauss, Jochen; Keller, Alexander; Bofinger, Lukas; Steffan-Dewenter, Ingolf in Global Change Biology (2022). in press.
• Potential change in the future spatial distribution of submerged macrophyte species and species richness: the role of today’s lake type and strength of compounded environmental change Lewerentz, Anne; Hoffmann, Markus; Hovestadt, Thomas; Raeder, Uta; Sarmento Cabral, Juliano in Preprint (2022).
• Putting vascular epiphytes on the traits map Hietz, Peter; Wagner, Katrin; Nunes Ramos, Flavio; Cabral, Juliano; Agudelo, Claudia; Benavides, Ana Maria; Cach-Pérez, Manuel Jesús; Cardelús, Catherine; Chilpa Galván, Nahlleli; Costa, Lucas; de Paula Oliveira, Rodolfo; Einzmann, Helena; Farias, Rafael; Guzmán Jacob, Valeria; Kattge, Jens; Kessler, Michael; Kirby, Catherine; Kreft, Holger; Kromer, Thorsten; Males, Jamie; Monsalve Correa, Samuel; Moreno-Chacón, Maria; Petter, Gunnar; Reyes-Garcia, Casandra; Saldana, Alfredo; Schellenberger Costa, David; Taylor, Amanda; Velázquez Rosas, Noé; Wanek, Wolfgang; Woods, Carrie; Zotz, Gerhard in Journal of Ecology (2022). 110 340–358.
• Recognition and reconstruction of cell differentiation patterns with deep learning Dirk, Robin; Fischer, Jonas L.; Schardt, Simon; Ankenbrand, Markus J.; Fischer, Sabine C. in arXiv (2022). 2212.10058.
• Scaling up our understanding of tipping points Kéfi, Sonia; Saade, Camille; Berlow, Eric; Cabral, Juliano S. Cabral; Fronhofer, Emanuel in Philosophical Transactions of the Royal Society B (2022). 377 20210386.
• Spatiotemporal dynamics of freshwater macrophytes in Bavarian lakes under environmental change Lewerentz, Anne F. PhD thesis, Universität Würzburg. (2022).

• (More than) Hitchhikers through the network: The shared microbiome of bees and flowers Keller, Alexander; McFrederick, Quinn S.; Dharampal, Prarthana; Steffan, Shawn; Danforth, Bryan N.; Leonhardt, Sara D. in Current Opinion in Insect Science (2021).
• Accuracy of the pneumatic method for estimating xylem vulnerability to embolism in temperate diffuse-porous tree species Paligi, Sharath Shyamappa; Link, Roman M.; Isaza, Emilie; Bittencourt, Paulo; Cabral, Juliano Sarmento; Jansen, Steven; Oliveira, Rafael S; Pereira, Luciano; Schuldt, Bernhard in bioRxiv (2021).
• Active zone compaction correlates with presynaptic homeostatic potentiation Mrestani, Achmed; Pauli, Martin; Kollmannsberger, Philip; Repp, Felix; Kittel, Robert J.; Eilers, Jens; Doose, Sören; Sauer, Markus; Sirén, Anna-Leena; Heckmann, Manfred; Paul, Mila M. in Cell Reports (2021). 37(1)
• Agent-based modeling of the effects of forest dynamics, selective logging, and fragment size on epiphyte communities Petter, Gunnar; Zotz, Gerhard; Kreft, Holger; Cabral, Juliano Sarmento in Ecology and Evolution (2021). (11) 2937–2951.
• An integrative environmental pollen diversity assessment and its importance for the Sustainable Development Goals Hornick, Thomas; Bastl, M; Bohlmann, S; Bonn, A; Bumberger, J; Dietrich, P; Gemeinholzer, B.; Grote, R; Harpole, W. S.; Heinold, B; Keller, Alexander; Luttkus, M. L.; Mäder, P.; Motivans, E.; Passonneau, S.; Punyasena, S.W.; Rakosy, Demetra; Richter, A.; Richter, R.; Sickel, W.; Steffan-Dewenter, I.; Theodorou, P.; Treudler, R.; Werchan, B.; Werchan, M.; Wolke, R.; Dunker, S. in Plants, People, Planet (2021). in press.
• Anthropogenic and environmental drivers shape diversity of non-native plants across the Pacific Wohlwend, Michael; Craven, Dylan; Weigelt, Patrick; Seebens, Hanno; Kreft, Holger; Winter, Marten; Zurell, Damaris; Cabral, Juliano Sarmento; Essl, Franz; van Kleunen, Mark; Pergl, Jan; Pysek, Petr; Knight, Tiffany in Diversity and Distributions (2021). 27 1120–1133.
• B0 shimming of the human heart at 7T Hock, Michael; Terekhov, Maxim; Stefanescu, Maria Roxana; Lohr, David; Herz, Stefan; Reiter, Theresa; Ankenbrand, Markus; Kosmala, Aleksander; Gassenmaier, Tobias; Juchem, Christoph; Schreiber, Laura Maria in Magnetic Resonance in Medicine (2021). 85(1) 182–196.
• bioDIVERsity. Ein Computerspiel gegen das Imageproblem von Wasserpflanzen Lewerentz, Anne; Schantz, David; Gröh, Julian; Knote, Andreas; Mammen, Sebastian von; Cabral, Juliano Sarmento in Mitteilungen der Fränkischen Geographischen Gesellschaft (2021). (67) 29–36.
• Changes amid constancy: flower and leaf microbiomes along land use gradients and between bioregions Gaube, Paul; Junker, Robert R.; Keller, Alexander in Basic and Applied Ecology (2021). 50 1–15.
• Cryptic species and hidden ecological interactions of halictine bees along an elevational gradient Mayr, Antonia V.; Keller, Alexander; Peters, Marcell K.; Grimmer, Gudrun; Krischke, Beate; Geyer, Mareen; Schmitt, Thomas; Steffan-Dewenter, Ingolf in Ecology and Evolution (2021).
• Dealing with software complexity in individual-based models Vedder, Daniel; Ankenbrand, Markus; Cabral, Juliano in Methods in Ecology and Evolution (2021). 12 2324–2333.
• Deep learning-based cardiac cine segmentation: Transfer learning application to 7T ultrahigh-field MRI Ankenbrand, Markus Johannes; Lohr, David; Schlötelburg, Wiebke; Reiter, Theresa; Wech, Tobias; Schreiber, Laura Maria in Magnetic Resonance in Medicine (2021). 86(4) 2179–2191.
• Defining the {Basis} of {Cyanine} {Phototruncation} {Enables} a {New} {Approach} to {Single}-{Molecule} {Localization} {Microscopy} Matikonda, Siddharth S.; Helmerich, Dominic A.; Meub, Mara; Beliu, Gerti; Kollmannsberger, Philip; Greer, Alexander; Sauer, Markus; Schnermann, Martin J. in ACS Central Science (2021). 7(7) 1144–1155.
• Depth diversity gradients of macrophytes: shape, drivers and recent shifts Lewerentz, Anne; Hoffmann, Markus; Cabral, Juliano Sarmento in Ecology and Evolution (2021). 11 13830–13845.
• Depth diversity gradients of macrophytes: Shape, drivers, and recent shifts Lewerentz, Anne; Hoffmann, Markus; Cabral, Juliano Sarmento in Ecology and Evolution (2021). 11(20) 13830–13845.
• DNA sequence-based biodiversity and interaction ecology Tiede, Julia; Keller, Alexander; Eitzinger, Bernhard in Basic and Applied Ecology (2021).
• Effects of three flower field types on bumblebees and their pollen diets Piko, Julia; Keller, Alexander; Geppert, Costanza; Batáry, Péter; Tscharntke, Teja; Westphal, Catrin; Hass, Annika L. in Basic and Applied Ecology (2021). 52 95–108.
• Functional resin use in solitary bees Chui, Shao Xiong; Keller, Alexander; Leonhardt, Sara in Ecological Entomology (2021). in press.
• gen3sis: The GENeral Engine for Eco-Evolutionary SImulationS on the origins of biodiversity Hagen, Oskar; Flück, Benjamin; Fopp, Fabian; Cabral, Juliano S.; Hartig, Florian; Pontarp, Mikael; Rangel, Thiago F.; Pellissier, Loïc in Plos Biology (2021). 19 e3001340.
• How bees find a way in European cities: pollen metabarcoding unravels multiple feeding strategies and their effects on distribution patterns in four wild bee species Casanelles Abella, Joan; Müller, Stefanie; Keller, Alexander; Aleixo, Cristiana; Alós Orti, Marta; Chiron, François; Deguines, Nicolas; Hallikma, Tiit; Laanisto, Lauri; Pinho, Pedro; Samson, Roeland; Tryjanowski, Piotr; Van Mensel, Anskje; Pellissier, Loïc; Moretti, Marco in Journal of Applied Ecology (2021). in press.
• Identifying {New} {Potential} {Biomarkers} in {Adrenocortical} {Tumors} {Based} on {mRNA} {Expression} {Data} {Using} {Machine} {Learning} Marquardt, André; Landwehr, Laura-Sophie; Ronchi, Cristina L.; di Dalmazi, Guido; Riester, Anna; Kollmannsberger, Philip; Altieri, Barbara; Fassnacht, Martin; Sbiera, Silviu in Cancers (2021). 13(18) 4671.
• Inferring core genome phylogenies for bacteria Keller, Alexander; Ankenbrand, Markus J in Bacterial Pangenomics (in press), A. Mengoni, M. Fondi, G. Bacci (eds.) (2021).
• Many small rather than few large sources identified in long-term bee pollen diets in agroecosystems Wilson, Rachele; Keller, Alexander; Shapcott, Alison; Leonhardt, Sara D.; Sickel, Wiebke; Hardwick, J. L.; Heard, Tim; Kaluza, Benjamin F; and Wallace, Helen in Agriculture, Ecosystems and Environment (2021).
• Niche evolution reveals disparate signatures of speciation in the ‘great speciator‘ (White-eyes, Aves: genus Zosterops) Engler, Jan O.; Lawrie, Yvonne; Cabral, Juliano S.; Lens, Luc in Journal of Biogeography (2021). 48 1981–1993.
• On the way to routine cardiac MRI at 7 Tesla - a pilot study on consecutive 84 examinations Reiter, Theresa; Lohr, David; Hock, Michael; Ankenbrand, Markus Johannes; Stefanescu, Maria Roxana; Kosmala, Aleksander; Kaspar, Mathias; Juchem, Christoph; Terekhov, Maxim; Schreiber, Laura Maria in PLOS ONE (2021). 16(7) 1–18.
• Open Science principles for accelerating trait-based science across the Tree of Life Gallagher, Rachael; Falster, Daniel S.; Maitner, Brian; Enquist, Brian; Ankenbrand, Markus; Balk, Meghan; Bland, Lucie; Boyle, Brad; Bravo, Catherine; Cavazos, Brittany; Fadrique, Belen; Feng, Xiao; Halbritter, Aud; Hammock, Jennifer; Hogan, James Aaron; Iversen, Colleen; Jochum, Malte; Kattge, Jens; Keller, Alexander; Madin, Joshua; Manning, Peter; McCormack, Luke; Michaletz, Sean; Park, Daniel; Pearse, William; Penone, Caterina; Perez, Timothy; Pineda-Munoz, Silvia; Poelen, Joritt; Ray, Courtenay; Salguero-Gomez, Roberto; Sauquet, Herve; Schneider, Florian; Spasojevic, Marko J.; Vandvik, Vigdis; Violle, Cyrille; Weiss, Katherine in Nature Ecology \& Evolution (2021). 294–303.
• Osmotic adaptation and compatible solute biosynthesis of phototrophic bacteria as revealed from genome analyses Imhoff, Johannes F.; Rahn, Tanja; Künzel, Sven; Keller, Alexander; Neulinger, Sven C. in Microorganisms (2021). 9(1) 46.
• Pollen diets and niche overlap of honey bees and native bees in protected areas Elliott, Brittany; Wilson, Rachele; Shapcott, Alison; Keller, Alexander; Newis, Ryan; Cannizzaro, Chris; Burwell, Chris; Smith, Tobias; Leonhardt, Sara D.; Kämper, Wiebke; Wallace, Helen in Basic and Applied Ecology (2021). Special issue: Sequence based molecular ecology
• Preservation methods of honey-bee collected pollen are not a source of bias in ITS2 metabarcoding Quaresma, Andreia; Brodschneider, Robert; Gratzer, Kristina; Gray, Alison; Keller, Alexander; Kilpinen, Ole; Rufino, Jose; van der Steen, Jozef; Vejsnaes, Flemming; Pinto, Maria Alice in Environmental Monitoring and Assessment (2021). in press.
• Propagule pressure and an invasion syndrome determine invasion success in a plant community model Vedder, Daniel; Leidinger, Ludwig; Sarmento Cabral, Juliano in Ecology and Evolution (2021). 11 17106–17116.
• Putative roles of bacteria in the carbon and nitrogen cycles in a tropical peat swamp forest Too, Chin Chin; Ong, Kuan Shion; Lee, Sui Mae; Yule, Catherine M.; Keller, Alexander in Basic and Applied Ecology (2021). Special issue: Predictors of microbiomes
• Self-configuring nnU-net pipeline enables fully automatic infarct segmentation in late enhancement MRI after myocardial infarction Heidenreich, Julius F.; Gassenmaier, Tobias; Ankenbrand, Markus J.; Bley, Thorsten A.; Wech, Tobias in European Journal of Radiology (2021). 141 109817.
• Sensitivity analysis for interpretation of machine learning based segmentation models in cardiac {MRI} Ankenbrand, Markus J.; Shainberg, Liliia; Hock, Michael; Lohr, David; Schreiber, Laura M. in BMC Medical Imaging (2021). 21(1) 27.
• Species richness is more important for ecosystem functioning than species turnover along an elevational gradient Albrecht, Joerg; Peters, Marcell K.; Classen, Alice; Becker, Joscha N.; Behler, Christina; Ensslin, Andreas; Ferger, Stefan W.; Gebert, Friederike; Helbig-Bonitz, Maria; Kindeketa, William J.; Mayr, Antonia V.; {Njovu, Henry K. Pabst}; Pommer, Ulf; Röder, Juliane; Rutten, Gemma; Schellenberger Costa, David; Sierra-Cornejo, Natalia; Vogeler, Anna; Vollstädt, Maximilian G. R.; Dulle, Hamadi I.; Eardley, Connal D.; Howell, Kim M.; Keller, Alexander; Peters, Ralph S.; Kakengi, Victor; Hemp, Claudia; Zhang, Jie; Manning, Peter; Müller, Thomas; Böhning-Gaese, Katrin; Brandl, Roland; Hertel, Dietrich; Kiese, Ralf; Kleyer, Michael; Kuzyakov, Yakov; Nauss, Thomas; Tschapka, Marco; Fischer, Markus; Hemp, Andreas; Steffan-Dewenter, Ingolf; Schleuning, Matthias in Nature Ecology and Evolution (2021). in press.
• Standard methods for pollen research Campos, Maria G.; Anjos, Ofélia; Chica, Manuel; Campoy, Pascual; Nozkova, Janka; Almaraz-Abarca, Norma; Barreto, Lidia M. R. C.; Nordi, João Carlos; Estevinho, Leticia M.; Pascoal, Ananias; Paula, Vanessa Branco; Chopina, Altino; Dias, Luis G.; j. Tešić, Živoslav L.; Mosić, Mirjana D.; Kostić, Aleksandar Ž.; Pešić, Mirjana B.; Milojković-Opsenica, Dušanka M.; Sickel, Wiebke; Ankenbrand, Markus J.; Grimmer, Gudrun; Steffan-Dewenter, Ingolf; Keller, Alexander; Förster, Frank; Tananaki, Chrysoula H.; Liolios, Vasilios; Kanelis, Dimitrios; Rodopoulou, Maria-Anna; Thrasyvoulou, Andreas; Paulo, Luísa; Kast, Christina; Lucchetti, Matteo A.; Glauser, Gaëtan; Lokutova, Olena; de Almeida-Muradian, Ligia Bicudo; Szczęsna, Teresa; Carreck, Norman L. in Journal of Apicultural Research (2021). 60(4) 1–109.
• Subgroup-{Independent} {Mapping} of {Renal} {Cell} {Carcinoma}—{Machine} {Learning} {Reveals} {Prognostic} {Mitochondrial} {Gene} {Signature} {Beyond} {Histopathologic} {Boundaries} Marquardt, André; Solimando, Antonio Giovanni; Kerscher, Alexander; Bittrich, Max; Kalogirou, Charis; Kübler, Hubert; Rosenwald, Andreas; Bargou, Ralf; Kollmannsberger, Philip; Schilling, Bastian; Meierjohann, Svenja; Krebs, Markus in Frontiers in Oncology (2021). 11
• Targeted volumetric single-molecule localization microscopy of defined presynaptic structures in brain sections Pauli, Martin; Paul, Mila M.; Proppert, Sven; Mrestani, Achmed; Sharifi, Marzieh; Repp, Felix; Kürzinger, Lydia; Kollmannsberger, Philip; Sauer, Markus; Heckmann, Manfred; Sirén, Anna-Leena in Communications Biology (2021). 4(1) 1–13.
• Temporal environmental variation imposes differential selection on both genomic and ecological traits Leidinger, Ludwig; Vedder, Daniel; Cabral, Juliano S. in Oikos (2021). 130 1100–1115.
• Transmission of Bacterial Symbionts With and Without Genome Erosion Between a Beetle Host and the Plant Environment Wierz, Jürgen C.; Gaube, Paul; Klebsch, Dagmar; Kaltenpoth, Martin; Flórez, Laura V. in Frontiers in Microbiology (2021). 12

• A systematic comparison of chloroplast genome assembly tools Freudenthal, Jan A.; Pfaff, Simon; Terhoeven, Niklas; Korte, Arthur; Ankenbrand, Markus J.; F{\"o}rster, Frank in Genome Biology (2020). 21(1) 254.
• BCdatabaser: on-the-fly reference database creation for DNA (meta-)barcoding Keller, Alexander; Hohlfeld, Sonja; Kolter, Andreas; Schultz, Jörg; Gemeinholzer, Birgit; Ankenbrand, Markus J. in Bioinformatics (2020). in press.
• Biological network growth in complex environments – a computational framework Paul, Torsten Johann; Kollmannsberger, Philip in PLOS Computational Biology (2020). 16(11) e1008003.
• Cell fate clusters in ICM organoids arise from cell fate heredity and division: a modelling approach Liebisch, Tim; Drusko, Armin; Mathew, Biena; Stelzer, Ernst H. K.; Fischer, Sabine C.; Matthäus, Franziska in Scientific Reports (2020). 10(1) 22405-.
• Chronic exposure to the pesticide flupyradifurone can lead to premature onset of foraging in honeybees (Apis mellifera) Hesselbach, Hannah; Seeger, Johannes; Schilcher, Felix; Ankenbrand, Markus; Scheiner, Ricarda in Journal of Applied Ecology (2020). 57 609–618.
• CRISPR/Cas 9 mediated mutations as a new tool for studying taste in honeybees Degirmenci, Laura; Geiger, Dietmar; Rogé Ferreira, Fábio Luiz; Keller, Alexander; Krischke, Beate; Beye, Martin; Steffan-Dewenter, Ingolf; Scheiner, Ricarda in Chemical Senses (2020). bjaa063.
• DeepCLEM: automated registration for correlative light and electron microscopy using deep learning [version 1; peer review: awaiting peer review] Seifert, R; Markert, SM; Britz, S; Perschin, V; Erbacher, C; Stigloher, C; Kollmannsberger, P in F1000Research (2020). 9(1275)
• Disentangling the drivers of local species richness using probabilistic species pools Karger, Dirk Nikolaus; Wüest, Rafael; König, Christian; Cabral, Juliano; Weigelt, Patrick; Zimmermann, Nikaus; Linder, Peter in Journal of Biogeography (2020). (47) 879–889.
• Efficient {Classification} of {White} {Blood} {Cell} {Leukemia} with {Improved} {Swarm} {Optimization} of {Deep} {Features} Sahlol, Ahmed T.; Kollmannsberger, Philip; Ewees, Ahmed A. in Scientific Reports (2020). 10(1) 2536.
• Exploring Ensemble Applications for Multi-sequence Myocardial Pathology Segmentation Ankenbrand, Markus J.; Lohr, David; Schreiber, Laura M. in Myocardial Pathology Segmentation Combining Multi-Sequence Cardiac Magnetic Resonance Images, X. Zhuang, L. Li (eds.) (2020). 60–67.
• Floral Species Richness Correlates with Changes in the Nutritional Quality of Larval Diets in a Stingless Bee Trinkl, Moritz; Kaluza, Benjamin F.; Wallace, Helen; Heard, Tim A.; Keller, A.; Leonhardt, Sara D. in Insects (2020). 11(2)
• Haruspex: {A} {Neural} {Network} for the {Automatic} {Identification} of {Oligonucleotides} and {Protein} {Secondary} {Structure} in {Cryo}-{Electron} {Microscopy} {Maps} Mostosi, Philipp; Schindelin, Hermann; Kollmannsberger, Philip; Thorn, Andrea in Angewandte Chemie International Edition (2020). n/a(n/a)
• Integrating the underlying structure of stochasticity into community ecology Shoemaker, Lauren G.; Sullivan, Lauren L.; Donohue, Ian; Cabral, Juliano S.; Williams, Ryan J.; Mayfield, Margaret M.; Chase, Jonathan M.; Chu, Chengjin; Harpole, W. Stanley; Huth, Andreas; HilleRisLambers, Janneke; James, Aubrie R.M.; Kraft, Nathan J.B.; May, Felix; Muthukrishnan, Ranjan; Satterlee, Sean; Taubert, Franziska; Wang, Xugao; Wiegand, Thorsten; Yang, Qiang; Abbott, Karen C. in Ecology (2020). 101 e02922.
• Introduced bees (Osmia cornifrons) collect pollen from both coevolved and novel host-plant species within their family-level phylogenetic preferences Vaudo, Anthony D.; Biddinger, David J.; Sickel, Wiebke; Keller, Alexander; López-Uribe, Margarita M. in Royal Society Open Science (2020). in press.
• Macroecology in the age of big data – where to go from here? Wüest, Rafael O.; Zimmermann, Niklaus E.; Zurell, Damaris; Alexander, Jake; Fritz, Susanne A.; Hof, Christian; Kreft, Holger; Normand, Signe; Sarmento Cabral, Juliano; Szekely, Eniko; Thuiller, Wilfried; Wikelski, Martin; Karger, Dirk Nikolaus in Journal of Biogeography (2020). 47 1–12.
• Mapping human pressures on biodiversity across the planet uncovers anthropogenic threat complexes Bowler, D. E.; Bjorkman, A.D.; Dornelas, M.; Myers-Smith, I.; O’Connor, M.; Navarro, L.M.; Niamir, A.; Supp, S.R.; Waldock, C.; Vellend, M.; Blowes, S.A.; Böhning-Gaese, K.; Bruelheide, H.; Elahi, R.; Antão, L.H.; Hines, J.; Isbell, F.; Jones, H.P.; Magurran, A.E.; Cabral, J.S.; Winter, M.; Bates, A.E. in People and Nature (2020). 2 380–394.
• Modeling how community assembly alters the functioning of ecosystems Koffel, Thomas; Kremer, Colin T.; Bannar-Martin, Katherine; Ernest, S. K. Morgan; Eisenhauer, Nico; Roscher, Christiane; Cabral, Juliano Sarmento; Leibold, Mathew A. in bioRxiv (2020).
• Strong phylogenetic constraint on transition metal incorporation in the mandibles of the hyper-diverse Hymenoptera (Insecta) Polidori, Carlo; Jorge, Alberto; Keller, Alexander; Ornosa, Concepcion; Tormos, Jose; Asis, Josep Daniel; Nieves-Aldrey, Jose Luis in Organisms, Diversity and Evolution (2020). in press.
• Susceptibility of red mason bee larvae to bacterial threats due to microbiome exchange with imported pollen provisions Voulgari-Kokota, Anna; Steffan-Dewenter, Ingolf; Keller, Alexander in Insects (2020). 11(6)
• The effect of species extinctions on island biogeographic patterns Matthews, Tom; Leidinger, Ludwig; Cabral, Juliano in Ecological Research (2020). 35 372–381.
• The genus Micromonospora as a model microorganism for bioactive natural product discovery Hifnawy, Mohamed S.; Fouda, Mohamed M.; Sayed, Ahmed M.; Mohammed, Rabab; Hassan, Hossam M.; AbouZid, Sameh F.; Rateb, Mostafa E.; Keller, Alexander; Adamek, Martina; Ziemert, Nadine; Abdelmohsen, Usama Ramadan in Royal Society of Chemistry Advances (2020). 10(35) 20939–20959.
• The transition from local to global patterns governs the differentiation of mouse blastocysts Fischer, Sabine C.; Corujo-Simon, Elena; Lilao-Garzon, Joaquin; Stelzer, Ernst H. K.; Muñoz-Descalzo, Silvia in PLOS ONE (2020). 15(5) 1–29.
• Tracking beekeepers in floristic regions of Iran: employing DNA metabarcoding to determine the geographical origin of honey Khansaritoreh, Elmira; Salamaki, Y; Ramezani, E; Akbari-Azirani, T; Keller, Alexander; Neumann, Katrin; Alizadeh, K; Zarre, S; Beckh, G; Behling, H in Heliyon (2020).
• {{G}enomes of the {V}enus {F}lytrap and {C}lose {R}elatives {U}nveil the {R}oots of {P}lant {C}arnivory} Palfalvi, G.; Hackl, T.; Terhoeven, N.; Shibata, T. F.; Nishiyama, T.; Ankenbrand, M.; Becker, D.; Förster, F.; Freund, M.; Iosip, A.; Kreuzer, I.; Saul, F.; Kamida, C.; Fukushima, K.; Shigenobu, S.; Tamada, Y.; Adamec, L.; Hoshi, Y.; Ueda, K.; Winkelmann, T.; Fuchs, J.; Schubert, I.; Schwacke, R.; Al-Rasheid, K.; Schultz, J.; Hasebe, M.; Hedrich, R. in Curr Biol (2020). 30(12) 2312–2320.
• {{H}ow to {G}row a {T}ree: {P}lant {V}oltage-{D}ependent {C}ation {C}hannels in the {S}potlight of {E}volution} Dreyer, I.; Sussmilch, F. C.; Fukushima, K.; Riadi, G.; Becker, D.; Schultz, J.; Hedrich, R. in Trends Plant Sci (2020).
• {{T}he {V}enus flytrap trigger hair-specific potassium channel {K}{D}{M}1 can reestablish the {K}+ gradient required for hapto-electric signaling} Iosip, A. L.; Böhm, J.; Scherzer, S.; Al-Rasheid, K. A. S.; Dreyer, I.; Schultz, J.; Becker, D.; Kreuzer, I.; Hedrich, R. in PLoS Biol (2020). 18(12) e3000964.

• A GABAergic and peptidergic sleep neuron as a locomotion stop neuron with compartmentalized Ca2+ dynamics Steuer Costa, Wagner; Van der Auwera, Petrus; Glock, Caspar; Liewald, Jana F.; Bach, Maximilian; Schüler, Christina; Wabnig, Sebastian; Oranth, Alexandra; Masurat, Florentin; Bringmann, Henrik; Schoofs, Liliane; Stelzer, Ernst H.K.; Fischer, Sabine C.; Gottschalk, Alexander in Nature Communications (2019). 10(4095)
• A minimal model for the latitudinal diversity gradient suggests a dominant role for ecological limits Etienne, Rampal S.; Cabral, Juliano S.; Hagen, Oskar; Hartig, Florian; Hurlbert, Allen H.; Pellissier, Loïc; Pontarp, Mikael; Storch, David in The American Naturalist (2019). (194) E122-E133.
• Active zone compaction for presynaptic strength Mrestani, Achmed; Kollmannsberger, Philip; Pauli, Martin; Repp, Felix; Kittel, Robert J.; Eilers, Jens; Doose, S{\"o}ren; Sauer, Markus; Sir{\’e}n, Anna-Leena; Heckmann, Manfred; Paul, Mila M. in bioRxiv (2019).
• An Introduction to Image-Based Systems Biology of Multicellular Spheroids for Experimentalists and Theoreticians Fischer, Sabine C. in Computational Biology, H. Husi (ed.) (2019).
• Assessing predicted isolation effects from the general dynamic model of island biogeography with an eco-evolutionary model for plants Cabral, J.S.; Whittaker, R.J.; Wiegand, K.; Kreft, H. in Journal of Biogeography (2019). 46 1569–1581.
• Bacterial community structure and succession in nests of two megachilid bee genera Voulgari-Kokota, Anna; Grimmer, Gudrun; Steffan-Dewenter, Ingolf; Keller, Alexander in FEMS Microbiology Ecology (2019). 95(1) fiy218.
• Climate–land-use interactions shape tropical mountain biodiversity and ecosystem functions Peters, Marcell K.; Hemp, Andreas; Appelhans, Tim; Becker, Joscha N.; Behler, Christina; Classen, Alice; Detsch, Florian; Ensslin, Andreas; Ferger, Stefan W.; Frederiksen, Sara B.; Gebert, Friederike; Gerschlauer, Friederike; Gütlein, Adrian; Helbig-Bonitz, Maria; Hemp, Claudia; Kindeketa, William J.; Kühnel, Anna; Mayr, Antonia V.; Mwangomo, Ephraim; Ngereza, Christine; Njovu, Henry K.; Otte, Insa; Pabst, Holger; Renner, Marion; Röder, Juliane; Rutten, Gemma; Schellenberger Costa, David; Sierra-Cornejo, Natalia; Vollstädt, Maximilian G. R.; Dulle, Hamadi I.; Eardley, Connal D.; Howell, Kim M.; Keller, Alexander; Peters, Ralph S.; Ssymank, Axel; Kakengi, Victor; Zhang, Jie; Bogner, Christina; Böhning-Gaese, Katrin; Brandl, Roland; Hertel, Dietrich; Huwe, Bernd; Kiese, Ralf; Kleyer, Michael; Kuzyakov, Yakov; Nauss, Thomas; Schleuning, Matthias; Tschapka, Marco; Fischer, Markus; Steffan-Dewenter, Ingolf in Nature (2019).
• Cold-adaptation of Subtercola vilae DB165T, an isolate from a high-altitude cold volcano lake, as revealed by its genome analysis Villalobos, Alvaro S; Wiese, Jutta; Imhoff, Johannes F; Dorador, Cristina; Keller, Alexander; Hentschel, Ute (2019).
• Drivers, diversity and functions of solitary bee microbiota Voulgari-Kokota, Anna; McFrederick, Quinn; Steffan-Dewenter, Ingolf; Keller, Alexander in Trends in Microbiology (2019). in press.
• Electron tomography of mouse LINC complexes at meiotic telomere attachment sites with and without microtubules Spindler, Marie-Christin; Redolfi, Josef; Helmprobst, Frederik; Kollmannsberger, Philip; Stigloher, Christian; Benavente, Ricardo in Communications Biology (2019). 2(1) 376-.
• Honey bee waggle dance communication increases diversity of pollen diets in intensively managed agricultural landscapes Nürnberger, Fabian; Keller, Alexander; Härtel, Stephan; Steffan-Dewenter, Ingolf in Molecular Ecology (2019). in press.
• Immersive Analysis of 3D Multi-cellular In-Vitro and In-Silico Cell Cultures Knote, Andreas; Fischer, Sabine C.; Cussat-Blanc, Sylvain; Niebling, Florian; Bernard, David; Cogoni, Florian; von Mammen, Sebastian in 2019 IEEE International Conference on Artificial Intelligence and Virtual Reality (AIVR) (2019). 82–89.
• Interactions between ecological, evolutionary, and environmental processes unveil complex dynamics of insular plant diversity Cabral, J.S.; Wiegand, K.; Kreft, H. in Journal of Biogeography (2019). 46 1582–1597.
• Linking the foraging patterns of megachilid bee species to nest bacteria Voulgari-Kokota, Anna; Ankenbrand, Markus; Grimmer, Gudrun; Steffan-Dewenter, Ingolf; Keller, Alexander in Ecology and Evolution (2019). in press.
• Mouse ICM organoids reveal three-dimensional cell fate clustering Mathew, Biena; Muñoz-Descalzo, Silvia; Corujo Simon, Elena; Schröter, Christian; Stelzer, Ernst H.K; Fischer, Sabine C. in Biophysical Journal (2019). 116 127–141.
• Species richness change across spatial scales Chase, Jonathan; McGill, Brian; Thompson, Patrick; Antao, Laura; Bates, Amanda; Blowes, Shane; Dornelas, Maria; Gonzalez, Andrew; Magurran, Anne; Supp, Sarah; Winter, Marten; Bjorkman, Anne; Bruelheide, Helge; Byrnes, Jarrett; Cabral, Juliano Sarmento; Elahi, Robin; Gomez, Catalina; Guzmán, Héctor; Isbell, Forest; Myers-Smith, Isla; Jones, Holly; Hines, Jessica; Vellend, Mark; Waldock, Conor; O’Connor, Mary in Oikos (2019).
• Surface tension determines tissue shape and growth kinetics Ehrig, Sebastian; Bidan, Cécile M.; West, Alan; Jacobi, Cornelius; Lam, Karen; Kollmannsberger, Philip; Petersen, Ansgar; Tomancak, Pavel; Kommareddy, Krishna; Fischer, Franz Dieter; Fratzl, Peter; Dunlop, John W. C. in Science Advances (2019). 5(9) eaav9394.
• The dimensionality of stability depends on disturbance type Radchuk, Viktoriia; De Laender, Frederik; Sarmento Cabral, Juliano; Boulangeat, Isabelle; Crawford, Michael; Bohn, Friedrich; De Raedt, Jonathan; Scherer, Cedric; Svenning, Jens-Christian; Thonicke, Kirsten; Schurr, Frank; Grimm, Volker; Kramer-Schadt, Stephanie in Ecology Letters (2019). 22 674–684.
• The latitudinal diversity gradient - novel understanding through mechanistic eco-evolutionary models Pontarp, Mikael; Bunnefeld, Lynsey; Cabral, Juliano Sarmento; Etienne, Rampal S.; Fritz, Susanne A.; Gillespie, Rosemary; Graham, Catherine H.; Hagen, Oskar; Hartig, Florian; Huang, Shan; Jansson, Roland; Maliet, Odile; Münkemüller, Tamara; Pellissier, Loïc; Rangel, Thiago F.; Storch, David; Wiegand, Thorsten; Hurlbert, Allen H. in Trends in Ecology & Evolution (2019). 34 211–223.
• Towards a {Connectomic} {Description} of the {Osteocyte} {Lacunocanalicular} {Network} in {Bone} Weinkamer, Richard; Kollmannsberger, Philip; Fratzl, Peter in Current Osteoporosis Reports (2019).
• Understanding extinction debts: spatio-temporal scales, mechanisms and a roadmap for future research Figueiredo, Ludmilla; Krauß, Jochen; Steffan-Dewenter, Ingolf; Sarmento Cabral, Juliano in Ecography (2019). 42 1973–1990.
• Venus flytrap microbiota withstand harsh conditions during prey digestion Sickel, Wiebke; Van der Weyer, Anna-Lena; Bemm, Felix; Schultz, Jörg; Keller, Alexander in FEMS Microbiology Ecology (2019). fiz010.
• {{A}cquiring {C}ontrol: {T}he {E}volution of {S}tomatal {S}ignalling {P}athways} Sussmilch, F. C.; Schultz, J.; Hedrich, R.; Roelfsema, M. R. G. in Trends Plant Sci. (2019). 24(4) 342–351.
• {{V}enus flytrap microbiotas withstand harsh conditions during prey digestion} Sickel, W.; Van de Weyer, A. L.; Bemm, F.; Schultz, J.; Keller, A. in FEMS Microbiol. Ecol. (2019). 95(3)

• Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning Kaltdorf, Kristin V; Theiss, Maria; Markert, Sebastian M; Zhen, Mei; Dandekar, Thomas; Stigloher, Christian; Kollmannsberger, Philip in PLoS one (2018). 13(10) e0205348.
• Draft Genome Sequence of Dyella sp. Strain C11, Isolated from a Malaysian Tropical Peat Swamp Forest Too, Chin Chin; Ong, Kuan Shion; Lee, Sui Mae; Yule, Catherine M; Keller, Alexander in Genome announcements (2018). 6(25) e00459–18.
• Draft Genome Sequence of Dyella sp. Strain C9, Isolated from a Malaysian Tropical Peat Swamp Forest Too, Chin Chin; Ong, Kuan Shion; Lee, Sui Mae; Yule, Catherine M; Keller, Alexander in Microbiol Res Announc (2018). 7(12) e01083–18.
• Draft Genome Sequence of Klebsiella sp. Strain C31 Isolated from a Malaysian Tropical Peat Swamp Forest Too, Chin Chin; Ong, Kuan Shion; Ankenbrand, Markus J; Lee, Sui Mae; Yule, Catherine M; Keller, Alexander in Genome announcements (2018). 6(25) e00560–18.
• Draft Genome Sequence of Paraburkholderia sp. Strain C35, Isolated from a Malaysian Tropical Peat Swamp Forest Too, Chin Chin; Ong, Kuan Shion; Ankenbrand, Markus J; Lee, Sui Mae; Yule, Catherine M; Keller, Alexander in Genome announcements (2018). 6(25) e00561–18.
• Draft Genome Sequence of Paraburkholderia sp. Strain C35, Isolated from a Malaysian Tropical Peat Swamp Forest Too, Chin Chin; Ong, Kuan Shion; Ankenbrand, Markus J.; Lee, Sui Mae; Yule, Catherine M.; Keller, Alexander in Genome Announcements (2018). 6(25)
• FENNEC - Functional Exploration of Natural Networks and Ecological Communities Ankenbrand, Markus J.; Hohlfeld, Sonja C. Y.; Foerster, Frank; Keller, Alexander in Methods in Ecology and Evolution (2018). 2028–2033.
• Integrating community assembly and biodiversity reveals new dimensions of ecosystem functions: the Community Assembly and the Functioning of Ecosystems (CAFE) approach Bannar-Martin, Katherine; Kremer, Colin; Ernest, Morgan; Leibold, Mathew; Auge, Harald; Chase, Jonathan; Declerck, Steven; Eisenhauer, Nico; Harpole, Stanley; Hillebrand, Helmut; Isbell, Forest; Koffel, Thomas; Larsen, Stefano; Narwani, Anita; Petermann, Jana; Roscher, Christiane; Sarmento Cabral, Juliano; Supp, Sarah in Ecology Letters (2018). 21 167–180.
• Microbial community structure in a Malaysian tropical peat swamp forest: the influence of tree species and depth Too, Chin Chin; Keller, Alexander; Sickel, Wiebke; Lee, Sui Mae; Yule, Catherine M. in Frontiers in Microbiology (2018). 9 2859.
• Natural allelic variation of the AZI1 gene controls root growth under zinc-limiting condition Bouain, Nadia; Satbhai, Santosh B.; Korte, Arthur; Saenchai, Chorpet; Desbrosses, Guilhem; Berthomieu, Pierre; Busch, Wolfgang; Rouached, Hatem in PLOS Genetics (2018). 14(4) 1–23.
• Physical contact between mesenchymal stem cells and endothelial precursors induces distinct signatures with relevance to the very early phase of regeneration Hafen, Bettina; Wiesner, Susanne; Schlegelmilch, Katrin; Keller, Alexander; Seefried, Lothar; Ebert, Regina; Walles, Heike; Jakob, Franz; Schütze, Norbert in Journal of Cellular Biochemistry (2018).
• reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome Terhoeven, Niklas; Schultz, Jörg; Hackl, Thomas in The Journal of Open Source Software (2018). 3(22) 527.
• reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome. Terhoeven, Niklas; Schultz, Jörg; Hackl, Thomas in Journal of Open Source Software (2018). 3(22) 527.
• Spatial scaling of extinction rates: theory and data reveal non-linearity, and a major upscaling and downscaling challenge Keil, P.; Pereira, H.M.; Cabral, J.S.; Chase, J.; May, F.; Martins, I.S.; Winter, M. in Global Ecology and Biogeography (2018). 27 2–13.
• Tensile forces drive a reversible fibroblast-to-myofibroblast transition during tissue growth in engineered clefts Kollmannsberger, Philip; Bidan, Cécile M; Dunlop, John; Fratzl, Peter; Vogel, Viola in Science Advances (2018). 4(1) eaao4881.
• The characterization of the circadian clock in the olive fly Bactrocera oleae (Diptera: Tephritidae) reveals a Drosophila-like organization Bertolini, Enrico; Kistenpfennig, Christa; Menegazzi, Pamela; Keller, Alexander; Koukidou, Martha; Helfrich-F{\"o}rster, Charlotte in Scientific Reports (2018). 8(1) 816.
• Wild bees and their nests host Paenibacillus bacteria with functional potential of avail Keller, Alexander; Brandel, Annette; Becker, Mira C.; Balles, Rebecca; Abdelmohlsen, Usama R.; Ankenbrand, Markus J.; Sickel, Wiebke in Microbiome (2018). (6) 229.
• {chloroExtractor}: extraction and assembly of the chloroplast genome from whole genome shotgun data Ankenbrand, Markus J; Pfaff, Simon; Terhoeven, Niklas; Qureischi, Musga; Gündel, Maik; Wei{\ss}, Clemens L.; Hackl, Thomas; Förster, Frank in The Journal of Open Source Software (2018). 3(21) 464.

• AliTV - interactive visualization of whole genome comparisons. Ankenbrand, Markus J.; Hohlfeld, Sonja; Hackl, Thomas; Förster, Frank in PeerJ Comput. Sci. (2017). 3 e116.
• An individual-based model for the collective cancer cell migration explains speed dynamics and phenotype variability in response to growth factors Stichel, D.; Middleton, A.M.; M{\"u}ller, B.F.; Depner, S.; Klingm{\"u}ller, U.; Breuhahn, K.; Matth{\"a}us, F. in NPJ Systems Biology and Applications (2017). 3 Art. no. 5.
• AraPheno: a public database for Arabidopsis thaliana phenotypes Seren, {\"U}mit; Grimm, Dominik; Fitz, Joffrey; Weigel, Detlef; Nordborg, Magnus; Borgwardt, Karsten; Korte, Arthur in Nucleic acids research (2017). 45(D1) D1054-D1059.
• Biodiversity dynamics on islands: explicitly accounting for causality in mechanistic models Leidinger, Ludwig; Cabral, Juliano Sarmento in Diversity (2017). 9(3)
• Biodiversity dynamics on islands: explicitly accounting for causality in mechanistic models Leidinger, Ludwig; Cabral, Juliano Sarmento in Diversity (2017). 9(30)
• biojs-io-biom, a {BioJS} component for handling data in Biological Observation Matrix ({BIOM}) format Ankenbrand, Markus J.; Terhoeven, Niklas; Hohlfeld, Sonja; Förster, Frank; Keller, Alexander in F1000Research (2017). 5 2348.
• Coalignment of osteocyte canaliculi and collagen fibers in human osteonal bone Repp, Felix; Kollmannsberger, Philip; Roschger, Andreas; Berzlanovich, Andrea; Gruber, Gerlinde; Roschger, Paul; Wagermaier, Wolfgang; Weinkamer, Richard in Journal of Stuctural Biology (2017). 199 177–186.
• Effects of time and isolation on plant diversity: testing island biogeography theory with an eco-evolutionary model Cabral, J.S.; Whittaker, R.J.; Wiegand, K.; Kreft, H. in bioRxiv (2017). (100289)
• FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms Kaltdorf, Kristin Verena; Schulze, Katja; Helmprobst, Frederik; Kollmannsberger, Philip; Dandekar, Thomas; Stigloher, Christian in PLOS Computational Biology (2017). 13(1) 1–21.
• Flagship umbrella species needed for conservation of overlooked biodiversity Kalinkat, G.; Cabral, J.S.; Darwall, W.; Ficetola, F.; Fisher, J.; Giling, D.; Gosselin, M.-P.; Grossart, H.-P.; Jähnig, S.; Jeschke, J.; Knopf, K.; Larsen, S.; Onandia, G.; Pätzig, M.; Saul, W.-C.; Singer, G.; Jarić, I. in Conservation Biology (2017). 31 481–485.
• Genetic Components of Root Architecture Remodeling in Response to Salt Stress Julkowska, Magdalena; Koevoets, Iko Tamar; Mol, Selena; Hoefsloot, Huub CJ; Feron, Richard; Tester, Mark; Keurentjes, Joost J.B.; Korte, Arthur; Haring, Michel A; de Boer, Gert-Jan; Testerink, Christa in The Plant Cell (2017).
• Honey bee foraging ecology: Season but not landscape diversity shapes the amount and diversity of collected pollen Danner, Nadja; Keller, Alexander; H{\"a}rtel, Stephan; Steffan-Dewenter, Ingolf in PloS one (2017). 12(8) e0183716.
• Interactions between ecological, evolutionary, and environmental processes unveil complex dynamics of island biodiversity Cabral, J.S.; Wiegand, K.; Kreft, H. in bioRxiv (2017). (099978)
• Karyotype diversity and genome size variation in Neotropical Maxillariinae orchids Moraes, A.; de Mesquita Filho, J.; Koehler, S.; Cabral, J.; Lopes Gomes, S.; Viccini, L.; Barros, F.; Felix, L.; Guerra, M.; Forni-Martins, E. in Plant Biology (2017). 19 298–308.
• Mechanistic models in macroecology and biogeography: state-of-art and prospects Cabral, Juliano Sarmento; Valente, Luis; Hartig, Florian in Ecography (2017). 40(267-280)
• Release from prey preservation behavior via prey switch allowed diversification of cuticular hydrocarbon profiles in digger wasps Wurdack, Mareike; Polidori, Carlo; Keller, Alexander; Feldhaar, Heike; Schmitt, Thomas in Evolution (2017). in press
• Spatial heterogeneity in the canalicular density of the osteocyte network in human osteons Repp, Felix; Kollmannsberger, Philip; Roschger, Andreas; Kerschnitzki, Michael; Berzlanovich, Andrea; Gruber, Gerlinde M.; Roschger, Paul; Wagermaier, Wolfgang; Weinkamer, Richard in Bone Reports (2017). 6 101–108.
• The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog Togninalli, Matteo; Seren, Ümit; Meng, Dazhe; Fitz, Joffrey; Nordborg, Magnus; Weigel, Detlef; Borgwardt, Karsten; Korte, Arthur; Grimm, Dominik G. in Nucleic Acids Research (2017). gkx954.
• The Small World of Osteocytes: Connectomics of the Lacuno-Canalicular Network in Bone. Kollmannsberger, Philip; Kerschnitzki, Michael; Repp, Felix; Wagermaier, Wolfgang; Weinkamer, Richard; Fratzl, Peter in New Journal of Physics (2017). 19 073019.

• 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana consortium, The 1001 genomes in Cell (2016). 166(2) 481–491.
• biojs-io-biom, a {BioJS} component for handling data in Biological Observation Matrix ({BIOM}) format Ankenbrand, Markus J.; Terhoeven, Niklas; Hohlfeld, Sonja; Förster, Frank; Keller, Alexander in F1000Research (2016). 5 2348.
• Leaf growth response to mild drought: natural variation in Arabidopsis sheds light on trait architecture Clauw, Pieter; Coppens, Frederik; Korte, Arthur; Herman, Dorota; Slabbinck, Bram; Dhondt, Stijn; Van Daele, Twiggy; De Milde, Liesbeth; Vermeersch, Mattias; Maleux, Katrien; others in The Plant Cell (2016). 28(10) 2417–2434.
• TBro: visualization and management of de novo transcriptomes. Ankenbrand, Markus J.; Weber, Lorenz; Becker, Dirk; Förster, Frank; Bemm, Felix in Database (2016). 2016
• {{A}{L}{V}{I}{S}: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments} Schwarz, R. F.; Tamuri, A. U.; Kultys, M.; King, J.; Godwin, J.; Florescu, A. M.; Schultz, J.; Goldman, N. in Nucleic Acids Res. (2016). 44(8) e77.
• {{G}ating of the two-pore cation channel {A}t{T}{P}{C}1 in the plant vacuole is based on a single voltage-sensing domain} Ja?lan, D.; Mueller, T. D.; Becker, D.; Schultz, J.; Cuin, T. A.; Marten, I.; Dreyer, I.; Schonknecht, G.; Hedrich, R. in Plant Biol (Stuttg) (2016). 18(5) 750–760.
• {{G}enome of a tardigrade: {H}orizontal gene transfer or bacterial contamination?} Bemm, F.; Weiss, C. L.; Schultz, J.; Forster, F. in Proc. Natl. Acad. Sci. U.S.A. (2016).
• {{V}enus flytrap carnivorous lifestyle builds on herbivore defense strategies} Bemm, F.; Becker, D.; Larisch, C.; Kreuzer, I.; Escalante-Perez, M.; Schulze, W. X.; Ankenbrand, M.; Van de Weyer, A. L.; Krol, E.; Al-Rasheid, K. A.; Mithofer, A.; Weber, A. P.; Schultz, J.; Hedrich, R. in Genome Res. (2016). 26(6) 812–825.
• {{W}{H}{A}{M}{Y} is a novel actin polymerase promoting myoblast fusion, macrophage cell motility and sensory organ development in {D}rosophila} Brinkmann, K.; Winterhoff, M.; Onel, S. F.; Schultz, J.; Faix, J.; Bogdan, S. in J. Cell. Sci. (2016). 129(3) 604–620.

• ITS2 Database V: Twice as Much Ankenbrand, Markus J.; Keller, Alexander; Wolf, Matthias; Schultz, Jörg; Förster, Frank in Molecular Biology and Evolution (2015). 32(11) 3030–3032.
• {{I}{T}{S}2 {D}atabase {V}: {T}wice as {M}uch} Ankenbrand, M. J.; Keller, A.; Wolf, M.; Schultz, J.; Forster, F. in Mol. Biol. Evol. (2015). 32(11) 3030–3032.

• {{T}he bilaterian roots of cordon-bleu} Schultz, J.; Terhoeven, N. in BMC Res Notes (2013). 6(1) 393.