Publications
2020 [ to top ]
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BCdatabaser: on-the-fly reference database creation for DNA (meta-)barcoding. in Bioinformatics (2020). in press.
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Biological network growth in complex environments – a computational framework. in bioRxiv (2020). 2020.06.01.127407.
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Disentangling the drivers of local species richness using probabilistic species pools. in Journal of Biogeography (2020). (47) 879-889.
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Efficient Classification of White Blood Cell Leukemia with Improved Swarm Optimization of Deep Features. in Scientific Reports (2020). 10(1) 2536.
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Floral Species Richness Correlates with Changes in the Nutritional Quality of Larval Diets in a Stingless Bee. in Insects (2020). 11(2)
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Haruspex: A Neural Network for the Automatic Identification of Oligonucleotides and Protein Secondary Structure in Cryo-Electron Microscopy Maps. in Angewandte Chemie International Edition (2020). n/a(n/a)
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Integrating the underlying structure of stochasticity into community ecology. in Ecology (2020). 101 e02922.
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Introduced bees (\em Osmia cornifrons\em ) collect pollen from both coevolved and novel host-plant species within their family-level phylogenetic preferences. in Royal Society Open Science (2020). in press.
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Macroecology in the age of big data – where to go from here? in Journal of Biogeography (2020). 47 1-12.
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Mapping human pressures on biodiversity across the planet uncovers anthropogenic threat complexes. in People and Nature (2020). 2 380-394.
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Open Science principles for accelerating trait-based science across the Tree of Life. in Nature Ecology & Evolution (2020). 294–303.
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Strong phylogenetic constraint on transition metal incorporation in the mandibles of the hyper-diverse Hymenoptera (Insecta). in Organisms, Diversity and Evolution (2020). in press.
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Susceptibility of red mason bee larvae to bacterial threats due to microbiome exchange with imported pollen provisions. in Insects (2020). 11(6)
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The effect of species extinctions on island biogeographic patterns. in Ecological Research (2020). 35 372-381.
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The genus Micromonospora as a model microorganism for bioactive natural product discovery. in Royal Society of Chemistry Advances (2020). 10(35) 20939-20959.
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The transition from local to global patterns governs the differentiation of mouse blastocysts. in PLOS ONE (2020). 15(5) 1-29.
2019 [ to top ]
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A GABAergic and peptidergic sleep neuron as a locomotion stop neuron with compartmentalized Ca2+ dynamics. in Nature Communications (2019). 10(4095)
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A minimal model for the latitudinal diversity gradient suggests a dominant role for ecological limits. in The American Naturalist (2019). (early view)
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Acquiring Control: The Evolution of Stomatal Signalling Pathways. in Trends Plant Sci. (2019). 24(4) 342--351.
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Active zone compaction for presynaptic strength. in bioRxiv (2019).
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An Introduction to Image-Based Systems Biology of Multicellular Spheroids for Experimentalists and Theoreticians. in Computational Biology, H. Husi (ed.) (2019).
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Assessing predicted isolation effects from the general dynamic model of island biogeography with an eco-evolutionary model for plants. in Journal of Biogeography (2019).
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Bacterial community structure and succession in nests of two megachilid bee genera. in FEMS Microbiology Ecology (2019). 95(1) fiy218.
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Cell Fate Clusters in ICM Organoids Arise from Cell Fate Heredity & Division – a Modelling Approach. in bioRxiv (2019).
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Climate–land-use interactions shape tropical mountain biodiversity and ecosystem functions. in Nature (2019).
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Cold-adaptation of Subtercola vilae DB165T, an isolate from a high-altitude cold volcano lake, as revealed by its genome analysis. (2019).
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Drivers, diversity and functions of solitary bee microbiota. in Trends in Microbiology (2019). in press.
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Electron tomography of mouse LINC complexes at meiotic telomere attachment sites with and without microtubules. in Communications Biology (2019). 2(1) 376--.
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Honey bee waggle dance communication increases diversity of pollen diets in intensively managed agricultural landscapes. in Molecular Ecology (2019). in press.
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Immersive Analysis of 3D Multi-cellular In-Vitro and In-Silico Cell Cultures. in 2019 IEEE International Conference on Artificial Intelligence and Virtual Reality (AIVR) (2019). 82-89.
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Interactions between ecological, evolutionary, and environmental processes unveil complex dynamics of insular plant diversity. in Journal of Biogeography (2019).
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Linking the foraging patterns of megachilid bee species to nest bacteria. in Ecology and Evolution (2019). in press.
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Species richness change across spatial scales. in Oikos (2019).
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Surface tension determines tissue shape and growth kinetics. in Science Advances (2019). 5(9) eaav9394.
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Targeted volumetric single-molecule localization microscopy of defined presynaptic structures in brain sections. in bioRxiv (2019).
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The dimensionality of stability depends on disturbance type. in Ecology Letters (2019). 22 674-684.
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The latitudinal diversity gradient - novel understanding through mechanistic eco-evolutionary models. in Trends in Ecology & Evolution (2019). 34 211-223.
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Towards a Connectomic Description of the Osteocyte Lacunocanalicular Network in Bone. in Current Osteoporosis Reports (2019).
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Understanding extinction debts: spatio-temporal scales, mechanisms and a roadmap for future research. in Ecography (2019). 42 1973-1990.
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Venus flytrap microbiota withstand harsh conditions during prey digestion. in FEMS Microbiology Ecology (2019). fiz010.
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Venus flytrap microbiotas withstand harsh conditions during prey digestion. in FEMS Microbiol. Ecol. (2019). 95(3)
2018 [ to top ]
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Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning. in PLoS one (2018). 13(10) e0205348.
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chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data. in The Journal of Open Source Software (2018). 3(21) 464.
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Draft Genome Sequence of Dyella sp. Strain C11, Isolated from a Malaysian Tropical Peat Swamp Forest. in Genome announcements (2018). 6(25) e00459--18.
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Draft Genome Sequence of Dyella sp. Strain C9, Isolated from a Malaysian Tropical Peat Swamp Forest. in Microbiol Res Announc (2018). 7(12) e01083--18.
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Draft Genome Sequence of Klebsiella sp. Strain C31 Isolated from a Malaysian Tropical Peat Swamp Forest. in Genome announcements (2018). 6(25) e00560--18.
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Draft Genome Sequence of Paraburkholderia sp. Strain C35, Isolated from a Malaysian Tropical Peat Swamp Forest. in Genome Announcements (2018). 6(25)
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Draft Genome Sequence of Paraburkholderia sp. Strain C35, Isolated from a Malaysian Tropical Peat Swamp Forest. in Genome announcements (2018). 6(25) e00561--18.
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FENNEC - Functional Exploration of Natural Networks and Ecological Communities. in Methods in Ecology and Evolution (2018). 2028–2033.
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Integrating community assembly and biodiversity reveals new dimensions of ecosystem functions: the Community Assembly and the Functioning of Ecosystems (CAFE) approach. in Ecology Letters (2018). 21 167–180.
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Microbial community structure in a Malaysian tropical peat swamp forest: the influence of tree species and depth. in Frontiers in Microbiology (2018). 9 2859.
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Mouse ICM organoids reveal three-dimensional cell fate clustering. in Biophysical Journal (2018). 116 127-141.
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Natural allelic variation of the AZI1 gene controls root growth under zinc-limiting condition. in PLOS Genetics (2018). 14(4) 1-23.
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Physical contact between mesenchymal stem cells and endothelial precursors induces distinct signatures with relevance to the very early phase of regeneration. in Journal of Cellular Biochemistry (2018).
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reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome. in The Journal of Open Source Software (2018). 3(22) 527.
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reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome. in Journal of Open Source Software (2018). 3(22) 527.
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Spatial scaling of extinction rates: theory and data reveal non-linearity, and a major upscaling and downscaling challenge. in Global Ecology and Biogeography (2018). 27 2-13.
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Tensile forces drive a reversible fibroblast-to-myofibroblast transition during tissue growth in engineered clefts. in Science Advances (2018). 4(1) eaao4881.
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The characterization of the circadian clock in the olive fly Bactrocera oleae (Diptera: Tephritidae) reveals a Drosophila-like organization. in Scientific Reports (2018). 8(1) 816.
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Wild bees and their nests host Paenibacillus bacteria with functional potential of avail. in Microbiome (2018). (6) 229.
2017 [ to top ]
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An individual-based model for the collective cancer cell migration explains speed dynamics and phenotype variability in response to growth factors. in NPJ Systems Biology and Applications (2017). 3 Art. no. 5.
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AraPheno: a public database for Arabidopsis thaliana phenotypes. in Nucleic acids research (2017). 45(D1) D1054--D1059.
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Biodiversity dynamics on islands: explicitly accounting for causality in mechanistic models. in Diversity (2017). 9(30)
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Biodiversity dynamics on islands: explicitly accounting for causality in mechanistic models. in Diversity (2017). 9(3)
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biojs-io-biom, a BioJS component for handling data in Biological Observation Matrix (BIOM) format. in F1000Research (2017). 5 2348.
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Coalignment of osteocyte canaliculi and collagen fibers in human osteonal bone. in Journal of Stuctural Biology (2017). 199 177-186.
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Effects of time and isolation on plant diversity: testing island biogeography theory with an eco-evolutionary model. in bioRxiv (2017). (100289)
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FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms. in PLOS Computational Biology (2017). 13(1) 1-21.
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Flagship umbrella species needed for conservation of overlooked biodiversity. in Conservation Biology (2017). 31 481-485.
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Genetic Components of Root Architecture Remodeling in Response to Salt Stress. in The Plant Cell (2017).
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Honey bee foraging ecology: Season but not landscape diversity shapes the amount and diversity of collected pollen. in PloS one (2017). 12(8) e0183716.
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Interactions between ecological, evolutionary, and environmental processes unveil complex dynamics of island biodiversity. in bioRxiv (2017). (099978)
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Karyotype diversity and genome size variation in Neotropical Maxillariinae orchids. in Plant Biology (2017). 19 298-308.
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Mechanistic models in macroecology and biogeography: state-of-art and prospects. in Ecography (2017). 40(267-280)
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Release from prey preservation behavior via prey switch allowed diversification of cuticular hydrocarbon profiles in digger wasps. in Evolution (2017). in press
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Spatial heterogeneity in the canalicular density of the osteocyte network in human osteons. in Bone Reports (2017). 6 101-108.
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The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. in Nucleic Acids Research (2017). gkx954.
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The Small World of Osteocytes: Connectomics of the Lacuno-Canalicular Network in Bone. in New Journal of Physics (2017). 19 073019.
2016 [ to top ]
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1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. in Cell (2016). 166(2) 481--491.
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ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments. in Nucleic Acids Res. (2016). 44(8) e77.
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biojs-io-biom, a BioJS component for handling data in Biological Observation Matrix (BIOM) format. in F1000Research (2016). 5 2348.
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Gating of the two-pore cation channel AtTPC1 in the plant vacuole is based on a single voltage-sensing domain. in Plant Biol (Stuttg) (2016). 18(5) 750--760.
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Genome of a tardigrade: Horizontal gene transfer or bacterial contamination? in Proc. Natl. Acad. Sci. U.S.A. (2016).
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Leaf growth response to mild drought: natural variation in Arabidopsis sheds light on trait architecture. in The Plant Cell (2016). 28(10) 2417--2434.
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TBro: visualization and management of de novo transcriptomes. in Database (2016). 2016
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Venus flytrap carnivorous lifestyle builds on herbivore defense strategies. in Genome Res. (2016). 26(6) 812--825.
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WHAMY is a novel actin polymerase promoting myoblast fusion, macrophage cell motility and sensory organ development in Drosophila. in J. Cell. Sci. (2016). 129(3) 604--620.
2015 [ to top ]
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ITS2 Database V: Twice as Much. in Molecular Biology and Evolution (2015). 32(11) 3030-3032.
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ITS2 Database V: Twice as Much. in Mol. Biol. Evol. (2015). 32(11) 3030--3032.
2013 [ to top ]
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The bilaterian roots of cordon-bleu. in BMC Res Notes (2013). 6(1) 393.
