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Center for Computational and Theoretical Biology

Internal Transcribed Spacer 2 (ITS2)

  • {{I}{T}{S}2 {D}atabase {V}: {T}wice as {M}uch}. Ankenbrand, M. J.; Keller, A.; Wolf, M.; Schultz, J.; Forster, F. in Mol. Biol. Evol. (2015). 32(11) 3030–3032.
  • {{I}{T}{S}2 database {I}{V}: interactive taxon sampling for internal transcribed spacer 2 based phylogenies}. Koetschan, C.; Hackl, T.; Muller, T.; Wolf, M.; Forster, F.; Schultz, J. in Mol. Phylogenet. Evol. (2012). 63(3) 585–588.
  • {{T}he {I}{T}{S}2 {D}atabase}. Merget, B.; Koetschan, C.; Hackl, T.; Forster, F.; Dandekar, T.; Muller, T.; Schultz, J.; Wolf, M. in J Vis Exp (2012). (61)
  • {{I}ncluding {R}{N}{A} secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees}. Keller, A.; Forster, F.; Muller, T.; Dandekar, T.; Schultz, J.; Wolf, M. in Biol. Direct (2010). 5 4.
  • {{T}he {I}{T}{S}2 {D}atabase {I}{I}{I}--sequences and structures for phylogeny}. Koetschan, C.; Forster, F.; Keller, A.; Schleicher, T.; Ruderisch, B.; Schwarz, R.; Muller, T.; Wolf, M.; Schultz, J. in Nucleic Acids Res. (2010). 38 D275–279.
  • {5.8{S}-28{S} r{R}{N}{A} interaction and {H}{M}{M}-based {I}{T}{S}2 annotation}. Keller, A.; Schleicher, T.; Schultz, J.; Muller, T.; Dandekar, T.; Wolf, M. in Gene (2009). 430 50–57.
  • {{I}{T}{S}2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics}. Schultz, J.; Wolf, M. in Mol. Phylogenet. Evol. (2009). 52 520–523.
  • {{T}he {I}{T}{S}2 {D}atabase {I}{I}: homology modelling {R}{N}{A} structure for molecular systematics}. Selig, C.; Wolf, M.; Muller, T.; Dandekar, T.; Schultz, J. in Nucleic Acids Res. (2008). 36 D377–380.
  • {{D}istinguishing species}. Muller, T.; Philippi, N.; Dandekar, T.; Schultz, J.; Wolf, M. in RNA (2007). 13 1469–1472.
  • {4{S}{A}{L}{E}--a tool for synchronous {R}{N}{A} sequence and secondary structure alignment and editing}. Seibel, P. N.; Muller, T.; Dandekar, T.; Schultz, J.; Wolf, M. in BMC Bioinformatics (2006). 7 498.
  • {{T}he internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses}. Schultz, J.; Muller, T.; Achtziger, M.; Seibel, P. N.; Dandekar, T.; Wolf, M. in Nucleic Acids Res. (2006). 34 W704–707.
  • {{A} common core of secondary structure of the internal transcribed spacer 2 ({I}{T}{S}2) throughout the {E}ukaryota}. Schultz, J.; Maisel, S.; Gerlach, D.; Muller, T.; Wolf, M. in RNA (2005). 11 361–364.
  • {{H}omology modeling revealed more than 20,000 r{R}{N}{A} internal transcribed spacer 2 ({I}{T}{S}2) secondary structures}. Wolf, M.; Achtziger, M.; Schultz, J.; Dandekar, T.; Muller, T. in RNA (2005). 11 1616–1623.