Center for Computational and Theoretical Biology

Internal Transcribed Spacer 2 (ITS2)

  • Ankenbrand, M. J., Keller, A., Wolf, M., Schultz, J., & Forster, F. {{I}{T}{S}2 {D}atabase {V}: {T}wice as {M}uch}. Mol. Biol. Evol., 32(11), 3030-3032.
  • Koetschan, C., Hackl, T., Muller, T., Wolf, M., Forster, F., & Schultz, J. {{I}{T}{S}2 database {I}{V}: interactive taxon sampling for internal transcribed spacer 2 based phylogenies}. Mol. Phylogenet. Evol., 63(3), 585-588.
  • Merget, B., Koetschan, C., Hackl, T., Forster, F., Dandekar, T., Muller, T., Schultz, J., & Wolf, M. {{T}he {I}{T}{S}2 {D}atabase}. J Vis Exp, 61, Article 61.
  • Keller, A., Forster, F., Muller, T., Dandekar, T., Schultz, J., & Wolf, M. {{I}ncluding {R}{N}{A} secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees}. Biol. Direct, 5, 4.
  • Koetschan, C., Forster, F., Keller, A., Schleicher, T., Ruderisch, B., Schwarz, R., Muller, T., Wolf, M., & Schultz, J. {{T}he {I}{T}{S}2 {D}atabase {I}{I}{I}--sequences and structures for phylogeny}. Nucleic Acids Res., 38, D275-279.
  • Keller, A., Schleicher, T., Schultz, J., Muller, T., Dandekar, T., & Wolf, M. {5.8{S}-28{S} r{R}{N}{A} interaction and {H}{M}{M}-based {I}{T}{S}2 annotation}. Gene, 430, 50-57.
  • Schultz, J., & Wolf, M. {{I}{T}{S}2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics}. Mol. Phylogenet. Evol., 52, 520-523.
  • Selig, C., Wolf, M., Muller, T., Dandekar, T., & Schultz, J. {{T}he {I}{T}{S}2 {D}atabase {I}{I}: homology modelling {R}{N}{A} structure for molecular systematics}. Nucleic Acids Res., 36, D377-380.
  • Muller, T., Philippi, N., Dandekar, T., Schultz, J., & Wolf, M. {{D}istinguishing species}. RNA, 13, 1469-1472.
  • Seibel, P. N., Muller, T., Dandekar, T., Schultz, J., & Wolf, M. {4{S}{A}{L}{E}--a tool for synchronous {R}{N}{A} sequence and secondary structure alignment and editing}. BMC Bioinformatics, 7, 498.
  • Schultz, J., Muller, T., Achtziger, M., Seibel, P. N., Dandekar, T., & Wolf, M. {{T}he internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses}. Nucleic Acids Res., 34, W704-707.
  • Schultz, J., Maisel, S., Gerlach, D., Muller, T., & Wolf, M. {{A} common core of secondary structure of the internal transcribed spacer 2 ({I}{T}{S}2) throughout the {E}ukaryota}. RNA, 11, 361-364.
  • Wolf, M., Achtziger, M., Schultz, J., Dandekar, T., & Muller, T. {{H}omology modeling revealed more than 20,000 r{R}{N}{A} internal transcribed spacer 2 ({I}{T}{S}2) secondary structures}. RNA, 11, 1616-1623.