Publications
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Preprints
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DeepCLEM: automated registration for correlative light and electron microscopy using deep learning [version 1; peer review: awaiting peer review] in F1000Research (2020). 9(1275)
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Active zone compaction for presynaptic strength in bioRxiv (2019).
Publications
2021[ to top ]
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Active zone compaction correlates with presynaptic homeostatic potentiation in Cell Reports (2021). 37(1)
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Defining the {Basis} of {Cyanine} {Phototruncation} {Enables} a {New} {Approach} to {Single}-{Molecule} {Localization} {Microscopy} in ACS Central Science (2021). 7(7) 1144–1155.
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Subgroup-{Independent} {Mapping} of {Renal} {Cell} {Carcinoma}—{Machine} {Learning} {Reveals} {Prognostic} {Mitochondrial} {Gene} {Signature} {Beyond} {Histopathologic} {Boundaries} in Frontiers in Oncology (2021). 11
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Targeted volumetric single-molecule localization microscopy of defined presynaptic structures in brain sections in Communications Biology (2021). 4(1) 1–13.
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Identifying {New} {Potential} {Biomarkers} in {Adrenocortical} {Tumors} {Based} on {mRNA} {Expression} {Data} {Using} {Machine} {Learning} in Cancers (2021). 13(18) 4671.
2020[ to top ]
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Haruspex: {A} {Neural} {Network} for the {Automatic} {Identification} of {Oligonucleotides} and {Protein} {Secondary} {Structure} in {Cryo}-{Electron} {Microscopy} {Maps} in Angewandte Chemie International Edition (2020). n/a(n/a)
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Biological network growth in complex environments – a computational framework in PLOS Computational Biology (2020). 16(11) e1008003.
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Efficient {Classification} of {White} {Blood} {Cell} {Leukemia} with {Improved} {Swarm} {Optimization} of {Deep} {Features} in Scientific Reports (2020). 10(1) 2536.
2019[ to top ]
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Electron tomography of mouse LINC complexes at meiotic telomere attachment sites with and without microtubules in Communications Biology (2019). 2(1) 376-.
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Surface tension determines tissue shape and growth kinetics in Science Advances (2019). 5(9) eaav9394.
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Towards a {Connectomic} {Description} of the {Osteocyte} {Lacunocanalicular} {Network} in {Bone} in Current Osteoporosis Reports (2019).
2018[ to top ]
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Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning in PLoS one (2018). 13(10) e0205348.
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Tensile forces drive a reversible fibroblast-to-myofibroblast transition during tissue growth in engineered clefts in Science Advances (2018). 4(1) eaao4881.
2017[ to top ]
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Spatial heterogeneity in the canalicular density of the osteocyte network in human osteons in Bone Reports (2017). 6 101–108.
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Coalignment of osteocyte canaliculi and collagen fibers in human osteonal bone in Journal of Stuctural Biology (2017). 199 177–186.
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The Small World of Osteocytes: Connectomics of the Lacuno-Canalicular Network in Bone. in New Journal of Physics (2017). 19 073019.
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FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms in PLOS Computational Biology (2017). 13(1) 1–21.
2016[ to top ]
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Gradual conversion of cellular stress patterns into pre-stressed matrix architecture during in vitro tissue growth in Journal of The Royal Society Interface (2016). 13(118)
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Cell sheet mechanics: How geometrical constraints induce the detachment of cell sheets from concave surfaces in Acta Biomaterialia (2016). 45 85–97.
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How type 1 fimbriae help Escherichia coli to evade extracellular antibiotics in Scientific Reports (2016). 6 18109.
2015[ to top ]
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Shaping tissues by balancing active forces and geometric constraints in Journal of Physics D: Applied Physics (2015). 49(5) 053001.
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2014[ to top ]
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Fiber-Assisted Molding (FAM) of Surfaces with Tunable Curvature to Guide Cell Alignment and Complex Tissue Architecture in Small (2014). 10(23) 4851–4857.
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2013[ to top ]
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Bacterial filamentation accelerates colonization of adhesive spots embedded in biopassive surfaces in New Journal of Physics (2013). 15(12) 125016.
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Architecture of the osteocyte network correlates with bone material quality in Journal of Bone and Mineral Research (2013). 28(8) 1837–1845.
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Geometry as a factor for tissue growth: towards shape optimization of tissue engineering scaffolds in Advanced healthcare materials (2013). 2(1) 186–194.
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Mineralization kinetics in murine trabecular bone quantified by time-lapsed in vivo micro-computed tomography in Bone (2013). 56(1) 55–60.
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Curvature-induced spontaneous detachment of vascular smooth muscle cell sheets: towards vascular self assembly in microchannels in Microsystem Technology in Chemistry and Life Science (2013).
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2012[ to top ]
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How Linear Tension Converts to Curvature: Geometric Control of Bone Tissue Growth in PloS one (2012). 7(5) e36336.
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2011[ to top ]
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The Heterogeneous Mineral Content of Bone—Using Stochastic Arguments and Simulations to Overcome Experimental Limitations in Journal of Statistical Physics (2011). 144(2) 316–331.
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Linear and nonlinear rheology of living cells in Annual Review of Materials Research (2011). 41 75–97.
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The physics of tissue patterning and extracellular matrix organisation: how cells join forces in Soft Matter (2011). 7(20) 9549–9560.
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Nonlinear viscoelasticity of adherent cells is controlled by cytoskeletal tension in Soft Matter (2011). 7(7) 3127–3132.
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2010[ to top ]
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Vinculin facilitates cell invasion into three-dimensional collagen matrices in Journal of Biological Chemistry (2010). 285(17) 13121–13130.
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2009[ to top ]
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Anchorage of vinculin to lipid membranes influences cell mechanical properties in Biophysical journal (2009). 97(12) 3105–3112.
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Filamin A is essential for active cell stiffening but not passive stiffening under external force in Biophysical journal (2009). 96(10) 4326–4335.
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Effect of surface pre-treatments on biocompatibility of magnesium in Acta biomaterialia (2009). 5(7) 2783–2789.
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Active soft glassy rheology of adherent cells in Soft Matter (2009). 5(9) 1771–1774.
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2008[ to top ]
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Breakdown of the endothelial barrier function in tumor cell transmigration in Biophysical journal (2008). 94(7) 2832–2846.
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Up-regulation of Rho/ROCK signaling in sarcoma cells drives invasion and increased generation of protrusive forces in Molecular Cancer Research (2008). 6(9) 1410–1420.
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Mechano-coupling and regulation of contractility by the vinculin tail domain in Biophysical journal (2008). 94(2) 661–670.
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2007[ to top ]
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High-force magnetic tweezers with force feedback for biological applications in Review of Scientific Instruments (2007). 78(11) 114301–114301.
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