Publications
Preprints
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DeepCLEM: automated registration for correlative light and electron microscopy using deep learning [version 1; peer review: awaiting peer review]. . In F1000Research, 9(1275). 2020.
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Active zone compaction for presynaptic strength. . In bioRxiv. Cold Spring Harbor Laboratory, 2019.
Publications
2021[ to top ]
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Active zone compaction correlates with presynaptic homeostatic potentiation. . In Cell Reports, 37(1). 2021.
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Defining the {Basis} of {Cyanine} {Phototruncation} {Enables} a {New} {Approach} to {Single}-{Molecule} {Localization} {Microscopy}. . In ACS Central Science, 7(7), bll 1144–1155. 2021.
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Subgroup-{Independent} {Mapping} of {Renal} {Cell} {Carcinoma}—{Machine} {Learning} {Reveals} {Prognostic} {Mitochondrial} {Gene} {Signature} {Beyond} {Histopathologic} {Boundaries}. . In Frontiers in Oncology, 11. 2021.
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Targeted volumetric single-molecule localization microscopy of defined presynaptic structures in brain sections. . In Communications Biology, 4(1), bll 1–13. 2021.
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Identifying {New} {Potential} {Biomarkers} in {Adrenocortical} {Tumors} {Based} on {mRNA} {Expression} {Data} {Using} {Machine} {Learning}. . In Cancers, 13(18), bl 4671. 2021.
2020[ to top ]
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Efficient {Classification} of {White} {Blood} {Cell} {Leukemia} with {Improved} {Swarm} {Optimization} of {Deep} {Features}. . In Scientific Reports, 10(1), bl 2536. 2020.
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Haruspex: {A} {Neural} {Network} for the {Automatic} {Identification} of {Oligonucleotides} and {Protein} {Secondary} {Structure} in {Cryo}-{Electron} {Microscopy} {Maps}. . In Angewandte Chemie International Edition, n/a(n/a). 2020.
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Biological network growth in complex environments – a computational framework. . In PLOS Computational Biology, 16(11), bl e1008003. 2020.
2019[ to top ]
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Towards a {Connectomic} {Description} of the {Osteocyte} {Lacunocanalicular} {Network} in {Bone}. . In Current Osteoporosis Reports. 2019.
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Surface tension determines tissue shape and growth kinetics. . In Science Advances, 5(9), bl eaav9394. 2019.
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Electron tomography of mouse LINC complexes at meiotic telomere attachment sites with and without microtubules. . In Communications Biology, 2(1), bl 376-. 2019.
2018[ to top ]
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Tensile forces drive a reversible fibroblast-to-myofibroblast transition during tissue growth in engineered clefts. . In Science Advances, 4(1), bl eaao4881. 2018.
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Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning. . In PLoS one, 13(10), bl e0205348. Public Library of Science, 2018.
2017[ to top ]
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FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms. . In PLOS Computational Biology, 13(1), bll 1–21. Public Library of Science, 2017.
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Spatial heterogeneity in the canalicular density of the osteocyte network in human osteons. . In Bone Reports, 6, bll 101–108. 2017.
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The Small World of Osteocytes: Connectomics of the Lacuno-Canalicular Network in Bone. . In New Journal of Physics, 19, bl 073019. 2017.
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Coalignment of osteocyte canaliculi and collagen fibers in human osteonal bone. . In Journal of Stuctural Biology, 199, bll 177–186. 2017.
2016[ to top ]
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How type 1 fimbriae help Escherichia coli to evade extracellular antibiotics. . In Scientific Reports, 6, bl 18109. The Author(s), 2016.
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Gradual conversion of cellular stress patterns into pre-stressed matrix architecture during in vitro tissue growth. . In Journal of The Royal Society Interface, 13(118). The Royal Society, 2016.
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Cell sheet mechanics: How geometrical constraints induce the detachment of cell sheets from concave surfaces. . In Acta Biomaterialia, 45, bll 85–97. 2016.
2015[ to top ]
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Shaping tissues by balancing active forces and geometric constraints. . In Journal of Physics D: Applied Physics, 49(5), bl 053001. IOP Publishing, 2015.
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2014[ to top ]
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Fiber-Assisted Molding (FAM) of Surfaces with Tunable Curvature to Guide Cell Alignment and Complex Tissue Architecture. . In Small, 10(23), bll 4851–4857. 2014.
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2013[ to top ]
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Mineralization kinetics in murine trabecular bone quantified by time-lapsed in vivo micro-computed tomography.. . In Bone, 56(1), bll 55–60. Elsevier, 2013.
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Architecture of the osteocyte network correlates with bone material quality. . In Journal of Bone and Mineral Research, 28(8), bll 1837–1845. Wiley Online Library, 2013.
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Bacterial filamentation accelerates colonization of adhesive spots embedded in biopassive surfaces. . In New Journal of Physics, 15(12), bl 125016. IOP Publishing, 2013.
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Curvature-induced spontaneous detachment of vascular smooth muscle cell sheets: towards vascular self assembly in microchannels. . In Microsystem Technology in Chemistry and Life Science. 2013.
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Geometry as a factor for tissue growth: towards shape optimization of tissue engineering scaffolds. . In Advanced healthcare materials, 2(1), bll 186–194. Wiley Online Library, 2013.
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2012[ to top ]
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How Linear Tension Converts to Curvature: Geometric Control of Bone Tissue Growth. . In PloS one, 7(5), bl e36336. Public Library of Science, 2012.
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2011[ to top ]
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Nonlinear viscoelasticity of adherent cells is controlled by cytoskeletal tension. . In Soft Matter, 7(7), bll 3127–3132. Royal Society of Chemistry, 2011.
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The Heterogeneous Mineral Content of Bone—Using Stochastic Arguments and Simulations to Overcome Experimental Limitations. . In Journal of Statistical Physics, 144(2), bll 316–331. Springer, 2011.
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Linear and nonlinear rheology of living cells. . In Annual Review of Materials Research, 41, bll 75–97. Annual Reviews, 2011.
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The physics of tissue patterning and extracellular matrix organisation: how cells join forces. . In Soft Matter, 7(20), bll 9549–9560. Royal Society of Chemistry, 2011.
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2010[ to top ]
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Vinculin facilitates cell invasion into three-dimensional collagen matrices. . In Journal of Biological Chemistry, 285(17), bll 13121–13130. ASBMB, 2010.
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2009[ to top ]
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Effect of surface pre-treatments on biocompatibility of magnesium. . In Acta biomaterialia, 5(7), bll 2783–2789. Elsevier, 2009.
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Anchorage of vinculin to lipid membranes influences cell mechanical properties. . In Biophysical journal, 97(12), bll 3105–3112. Elsevier, 2009.
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Active soft glassy rheology of adherent cells. . In Soft Matter, 5(9), bll 1771–1774. The Royal Society of Chemistry, 2009.
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Filamin A is essential for active cell stiffening but not passive stiffening under external force. . In Biophysical journal, 96(10), bll 4326–4335. Elsevier, 2009.
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2008[ to top ]
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Breakdown of the endothelial barrier function in tumor cell transmigration. . In Biophysical journal, 94(7), bll 2832–2846. Elsevier, 2008.
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Mechano-coupling and regulation of contractility by the vinculin tail domain. . In Biophysical journal, 94(2), bll 661–670. Elsevier, 2008.
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Up-regulation of Rho/ROCK signaling in sarcoma cells drives invasion and increased generation of protrusive forces. . In Molecular Cancer Research, 6(9), bll 1410–1420. AACR, 2008.
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2007[ to top ]
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High-force magnetic tweezers with force feedback for biological applications. . In Review of Scientific Instruments, 78(11), bll 114301–114301. AIP, 2007.
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