Lehrstuhl für Biotechnologie und Biophysik

    Priv.-Doz. Dr. Sören Doose



    List of publications

    [ 2018 ] [ 2017 ] [ 2016 ] [ 2015 ] [ 2014 ] [ 2013 ] [ 2012 ] [ 2011 ] [ 2010 ] [ 2009 ] [ 2008 ] [ 2007 ] [ 2006 ] [ 2005 ] [ 2004 ] [ 2003 ]

    2018 [ nach oben ]

    • Sisario, D., Memmel, S., Doose, S., Neubauer, J., Zimmermann, H., Flentje, M., Djuzenova, C.S., Sauer, M., Sukhorukov, V.L.: Nanostructure of DNA repair foci revealed by superresolution microscopy. The FASEB Journal. fj.201701435-- (2018).
    • Brunk, M., Sputh, S., Doose, S., van de Linde, S., Terpitz, U.: HyphaTracker: An ImageJ toolbox for time-resolved analysis of spore germination in filamentous fungi. Scientific Reports. 8, 605-- (2018).

    2017 [ nach oben ]

    • Burgert, A., Schlegel, J., Bécam, J., Doose, S., Bieberich, E., Schubert-Unkmeir, A., Sauer, M.: Characterization of Plasma Membrane Ceramides by Super-Resolution Microscopy. Angewandte Chemie. (2017).

    2016 [ nach oben ]

    • Maric, H.M., Hausrat, T.J., Neubert, F., Dalby, N.O., Doose, S., Sauer, M., Kneussel, M., Stromgaard, K.: Gephyrin-binding peptides visualize postsynaptic sites and modulate neurotransmission. Nat Chem Biol. advance online publication, (2016).
    • Mateos-Gil, P., Letschert, S., Doose, S., Sauer, M.: Super-resolution imaging of plasma membrane proteins with click chemistry. Frontiers in Cell and Developmental Biology. 4, 98-- (2016).

    2015 [ nach oben ]

    • Burgert, A., Letschert, S., Doose, S., Sauer, M.: Artifacts in single-molecule localization microscopy. Histochemistry and Cell Biology. 144, 123-131 (2015).
    • Werner, C., Pauli, M., Doose, S., Weishaupt, A., Haselmann, H., Grünewald, B., Sauer, M., Heckmann, M., Toyka, K.V., Asan, E., Sommer, C., Geis, C.: Human autoantibodies to amphiphysin induce defective presynaptic vesicle dynamics and composition. Brain. (2015).

    2014 [ nach oben ]

    • Letschert, S., Göhler, A., Franke, C., Bertleff-Zieschang, N., Memmel, E., Doose, S., Seibel, J., Sauer, M.: Super-Resolution Imaging of Plasma Membrane Glycans. Angewandte Chemie International Edition. n/a--n/a (2014).

    2013 [ nach oben ]

    • Steger, K., Bollmann, S., Noe, F., Doose, S.: Systematic evaluation of fluorescence correlation spectroscopy data analysis on the nanosecond time scale. Phys. Chem. Chem. Phys. - (2013).
    • Seibel, J., König, S., Göhler, A., Doose, S., Memmel, E., Bertleff, N., Sauer, M.: Investigating infection processes with a workflow from organic chemistry to biophysics: the combination of metabolic glycoengineering, super-resolution fluorescence imaging and proteomics. Expert Rev Proteomics. 10, 25--31 (2013).
    • Schäfer, P., van de Linde, S., Lehmann, J., Sauer, M., Doose, S.: Methylene blue- and thiol-based oxygen depletion for super-resolution imaging. Analytical Chemistry. 85, 3393 - 3400 (2013).

    2012 [ nach oben ]

    • Yahiatène, I., Doose, S., Huser, T., Sauer, M.: Correlation-Matrix Analysis of Two-Color Coincidence Events in Single-Molecule Fluorescence Experiments. Analytical Chemistry. 84, 2729-2736 (2012).
    • Göhler, A., Büchner, C., André, S., Doose, S., Kaltner, H., Gabius, H.-J.: Analysis of homodimeric avian and human galectins by two methods based on fluorescence spectroscopy: Different structural alterations upon oxidation and ligand binding. Biochimie. 94, 2649 - 2655 (2012).

    2011 [ nach oben ]

    • Gohler, A., Buchner, C., Andre, S., Doose, S., Kaltner, H., Gabius, H.-J.: Sensing ligand binding to a clinically relevant lectin by tryptophan fluorescence anisotropy. Analyst. 136, 5270-5276 (2011).
    • Bollmann, S., Burgert, A., Plattner, C., Nagel, L., Sewald, N., Löllmann, M., Sauer, M., Doose, S.: Conformational Flexibility of Glycosylated Peptides. ChemPhysChem. 12, 2907--2911 (2011).
    • Bollmann, S., Lollmann, M., Sauer, M., Doose, S.: Dimer formation of organic fluorophores reports on biomolecular dynamics under denaturing conditions. Phys. Chem. Chem. Phys. 13, 12874-12882 (2011).
    • van de Linde, S., Krstic, I., Prisner, T., Doose, S., Heilemann, M., Sauer, M.: Photoinduced formation of reversible dye radicals and their impact on super-resolution imaging. Photochem. Photobiol. Sci. 10, 499-506 (2011).
    • Noe, F., Doose, S., Daidone, I., Löllmann, M., Sauer, M., Chodera, J.D., Smith, J.C.: Dynamical fingerprints for probing individual relaxation processes in biomolecular dynamics with simulations and kinetic experiments. Proceedings of the National Academy of Sciences. (2011).

    2010 [ nach oben ]

    • Goehler, A., Andre, S., Kaltner, H., Sauer, M., Gabius, H.-J., Doose, S.: Hydrodynamic Properties of Human Adhesion/Growth-Regulatory Galectins Studied by Fluorescence Correlation Spectroscopy. BIOPHYSICAL JOURNAL. 98, 3044-3053 (2010).
    • Daidone, I., Neuweiler, H., Doose, S., Sauer, M., Smith, J.C.: Hydrogen-Bond Driven Loop-Closure Kinetics in Unfolded Polypeptide Chains. PLOS COMPUTATIONAL BIOLOGY. 6, (2010).

    2009 [ nach oben ]

    • Doose, S., Neuweiler, H., Sauer, M.: Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules. CHEMPHYSCHEM. 10, 1389-1398 (2009).

    2008 [ nach oben ]

    • Schuettpelz, M., Schoening, J.C., Doose, S., Neuweiler, H., Peters, E., Staiger, D., Sauer, M.: Changes in conformational dynamics of mRNA upon AtGRP7 binding studied by fluorescence correlation spectroscopy. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 130, 9507-9513 (2008).
    • Doose, S.: Importance of Backbone and Solvent Properties for Conformational Dynamics in Polypeptides. CHEMPHYSCHEM. 9, 2687-2689 (2008).
    • Goodman, R.P., Heilemann, M., Doose, S., Erben, C.M., Kapanidis, A.N., Turberfield, A.J.: Reconfigurable, braced, three-dimensional DNA nanostructures. NATURE NANOTECHNOLOGY. 3, 93-96 (2008).

    2007 [ nach oben ]

    • Doose, S.: Optical amplification from single excitons in collodial quantum dots. SMALL. 3, 1856-1858 (2007).
    • Doose, S., Neuweiler, H., Barsch, H., Sauer, M.: Probing polyproline structure and dynamics by photoinduced electron transfer provides evidence for deviations from a regular polyproline type II helix. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 104, 17400-17405 (2007).
    • Doose, S., Heilemann, M., Michalet, X., Weiss, S., Kapanidis, A.: Periodic acceptor excitation spectroscopy of single molecules. European Biophysics Journal. 36, 669-674 (2007).
    • Vogelsang, J., Doose, S., Sauer, M., Tinnefeld, P.: Single-Molecule Fluorescence Resonance Energy Transfer in Nanopipets: Improving Distance Resolution and Concentration Range. ANALYTICAL CHEMISTRY. 79, 7367-7375 (2007).
    • Neuweiler, H., Lollmann, M., Doose, S., Sauer, M.: Dynamics of unfolded polypeptide chains in crowded environment studied by fluorescence correlation spectroscopy. JOURNAL OF MOLECULAR BIOLOGY. 365, 856-869 (2007).
    • Doose, S., Barsch, H., Sauer, M.: Polymer properties of polythymine as revealed by translational diffusion. BIOPHYSICAL JOURNAL. 93, 1224-1234 (2007).

    2006 [ nach oben ]

    • Kim, J., Doose, S., Neuweiler, H., Sauer, M.: The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy. NUCLEIC ACIDS RESEARCH. 34, 2516-2527 (2006).
    • Pinaud, F., Michalet, X., Bentolila, L.A., Tsay, J.M., Doose, S., Li, J.J., Iyer, G., Weiss, S.: Advances in fluorescence imaging with quantum dot bio-probes. BIOMATERIALS. 27, 1679-1687 (2006).
    • Tsay, J.M., Doose, S., Weiss, S.: Rotational and translational diffusion of peptide-coated CdSe/CdS/ZnS nanorods studied by fluorescence correlation spectroscopy. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 128, 1639-1647 (2006).

    2005 [ nach oben ]

    • Neuweiler, H., Doose, S., Sauer, M.: A microscopic view of miniprotein folding: Enhanced folding efficiency through formation of an intermediate. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 102, 16650-16655 (2005).
    • Doose, S., Neuweiler, H., Sauer, M.: A close look at fluorescence quenching of organic dyes by tryptophan. CHEMPHYSCHEM. 6, 2277-2285 (2005).
    • Doose, S., Tsay, J.M., Pinaud, F., Weiss, S.: Comparison of photophysical and colloidal properties of biocompatible semiconductor nanocrystals using fluorescence correlation spectroscopy. ANALYTICAL CHEMISTRY. 77, 2235-2242 (2005).
    • Michalet, X., Pinaud, F.F., Bentolila, L.A., Tsay, J.M., Doose, S., Li, J.J., Sundaresan, G., Wu, A.M., Gambhir, S.S., Weiss, S.: Quantum dots for live cells, in vivo imaging, and diagnostics. SCIENCE. 307, 538-544 (2005).
    • Tsay, J.M., Doose, S., Pinaud, F., Weiss, S.: Enhancing the photoluminescence of peptide-coated nanocrystals with shell composition and UV irradiation. JOURNAL OF PHYSICAL CHEMISTRY B. 109, 1669-1674 (2005).
    • Kapanidis, A.N., Margeat, E., Laurence, T.A., Doose, S., Ho, S.O., Mukhopadhyay, J., Kortkhonjia, E., Mekler, V., Ebright, R.H., Weiss, S.: Retention of transcription initiation factor sigma(70) in transcription elongation: Single-molecule analysis. MOLECULAR CELL. 20, 347-356 (2005).

    2004 [ nach oben ]

    • Kapanidis, A.N., Lee, N.K., Laurence, T.A., Doose, S., Margeat, E., Weiss, S.: Fluorescence-aided molecule sorting: Analysis of structure and interactions by alternating-laser excitation of single molecules. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 101, 8936-8941 (2004).

    2003 [ nach oben ]

    • Michalet, X., Kapanidis, A.N., Laurence, T., Pinaud, F., Doose, S., Pflughoefft, M., Weiss, S.: The power and prospects of fluorescence microscopies and spectroscopies. ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE. 32, 161-182 (2003).

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