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    Chair of Bioinformatics

    Shishir K Gupta

    Contact

    Shishir Kumar Gupta, Dr. rer. nat.

    Evolutionary Genomics Group,
    Center for Computational and Theoretical Biology,
    Universität Würzburg,
    97078 Würzburg, Germany

    Department of Bioinformatics,
    Biozentrum,
    Universität Würzburg,
    Am Hubland,
    D-97074 Würzburg, Germany

    Tel.: +49 (0)931 31 89747
    Fax: +49 (0)931 31 84552

    Email: shishir.gupta(at)uni-wuerzburg.de

    Google Scholar     Linkedin     Orcid     Researchgate     Academia     Loop

    associated with FungiNET

    Teaching

    Topics in Bioinformatics
    Topics in Systems Biology 

    Publications (2018-21)

    An Ebola, Neisseria and Trypanosoma human protein interaction census reveals a conserved human protein cluster targeted by various human pathogens
    Gupta SK, Ponte-Sucre A, Bencurova E, Dandekar T    
    Computational and Structural Biotechnology Journal, 2021 doi.org/10.1016/j.csbj.2021.09.017

    Alveolar Regeneration in COVID-19 Patients: A Network Perspective
    Gupta SK, Srivastava M, Minocha R, Akash A, Dangwal S, Dandekar T    
    International Journal of Molecular Sciences, 2021 22:20, p.11279 doi.org/10.3390/ijms222011279

    Aspergillus fumigatus versus Genus Aspergillus: Conservation, adaptive evolution and specific virulence genes
    Gupta SK, Srivastava M, Osmanoglu Ö, Xu Z, Brakhage AA, Dandekar T    
    Microorganisms, 2021 9:10, p.2014 doi.org/10.3390/microorganisms9102014

    Pathogen and Host-Pathogen Protein Interactions Provide a Key to Identify Novel Drug Targets
    Gupta SK, Osmanoglu Ö, Srivastava M, Bencúrová E, Dandekar T    
    Reference Module in Biomedical Sciences: Systems Medicine: Integrative, Qualitative and Computational Approaches: Elsevier, 2020, 2:543-553 doi:10.1016/B978-0-12-801238-3.11607-1

    Aspergillus fumigatus Challenged by Human Dendritic Cells: Metabolic and Regulatory Pathway Responses Testify a Tight Battle
    Srivastava M, Bencurova E, Gupta SK, Weiss E, Loffler J, Dandekar T
    Front Cell Infect Microbiol, 2019, 9: 168 doi:10.3389/fcimb.2019.00168

    C. elegans protein interaction network analysis probes RNAi validated pro-longevity effect of nhr-6, a human homolog of tumor suppressor Nr4a1
    Akhoon BA, Gupta SK, Tiwari S, Rathor L, Pant A, Singh N, et al    Scientific reports, 2019, 9(1): 15711 doi:10.1038/s41598-019-51649-0

    Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs
    Gupta SK, Srivastava M, Osmanoglu Ö, Dandekar T
    Scientific reports, 2019, 10(1):2334 doi:10.1038/s41598-020-59344-1

    Bioinformatics in Leishmania Drug Design
    Gupta SK, Dandekar T
    Drug Resistance in Leishmania Parasites: Springer, Cham, 2018, 2018: 297-317 doi:10.1007/978-3-319-74186-4_13

    Omics and bioinformatics applied to vaccine development against Borrelia
    Bencurova E, Gupta SK, Oskoueian E, Bhide M, Dandekar T
    Mol Omics, 2018, 14(5): 330-40 doi:10.1039/c8mo00130h

    Delay in antibiotic therapy results in fatal disease outcome in murine pneumococcal pneumonia
    Berger S, Goekeri C, Gupta SK, Vera J, Dietert K, Behrendt U, et al
    Crit Care, 2018, 22(1): 287 doi:10.1186/s13054-018-2224-5

    Identification of Antifungal Targets Based on Computer Modeling
    Bencurova E, Gupta SK, Sarukhanyan E, Dandekar T
    J Fungi, 2018, 4(3): 81 doi:10.3390/jof4030081

    Complete list of Publications