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    Department of Botany I - Plant-Physiology and Biophysics

    Publications

    Publications Dr. Kenji Fukushima

    2022[ to top ]
    • Fukushima, K., & Pollock, D. D. Detecting macroevolutionary genotype-phenotype associations using error-corrected rates of protein convergence. BioRxiv. https://doi.org/10.1101/2022.04.06.487346
    • Naito, K., Wakatake, T., Shibata, T. F., Iseki, K., Shigenobu, S., Takahashi, Y., Ogiso-Tanaka, E., Muto, C., Teruya, K., Shiroma, A., Shimoji, M., Satou, K., Hirano, T., Nagano, A. J., Tomooka, N., Hasebe, M., Fukushima, K., & Sakai, H. Genome sequence of 12 Vigna species as a knowledge base of stress tolerance and resistance. BioRxiv. https://doi.org/10.1101/2022.03.28.486085
    2021[ to top ]
    • Winkelmüller, T. M., Entila, F., Anver, S., Piasecka, A., Song, B., Dahms, E., Sakakibara, H., Gan, X., Kułak, K., Sawikowska, A., Krajewski, P., Tsiantis, M., Garrido-Oter, R., Fukushima, K., Schulze-Lefert, P., Laurent, S., Bednarek, P., & Tsuda, K. Gene expression evolution in pattern-triggered immunity within <i>Arabidopsis thaliana</i> and across Brassicaceae species. The Plant Cell, 33, 1863-1887. https://doi.org/https://doi.org/10.1093/plcell/koab073
    • Hedrich, R., & Fukushima, K. On the origin of carnivory: Molecular physiology and evolution of plants on an animal diet. Annual Review of Plant Biology, 72, 133-153. https://doi.org/10.1146/annurev-arplant-080620-010429
    • Fukushima, K., Narukawa, H., Palfalvi, G., & Hasebe, M. A discordance of seasonally covarying cues uncovers misregulated phenotypes in the heterophyllous pitcher plant Cephalotus follicularis. Proceedings of the Royal Society B, 288(1943), 10.1098/rspb.2020.2568. https://doi.org/10.1098/rspb.2020.2568
    2020[ to top ]
    • Suda, H., Mano, H., Toyota, M., Fukushima, K., Mimura, T., Tsutsui, I., Hedrich, R., Tamada, Y., & Hasebe, M. Calcium dynamics during trap closure visualized in transgenic Venus flytrap. Nature Plants, 6(10), 1219-1224. https://doi.org/10.1038/s41477-020-00773-1
    • Fukushima, K., & Pollock, D. D. Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution. Nature Communications, 11(1), 4459-. https://doi.org/10.1038/s41467-020-18090-8
    • Dreyer, I., Sussmilch, F. C., Fukushima, K., Riadi, G., Becker, D., Schultz, J., & Hedrich, R. How to Grow a Tree: Plant Voltage-Dependent Cation Channels in the Spotlight of Evolution. Trends in Plant Science. https://doi.org/https://doi.org/10.1016/j.tplants.2020.07.011
    • Palfalvi, G., Hackl, T., Terhoeven, N., Shibata, T. F., Nishiyama, T., Ankenbrand, M., Becker, D., Förster, F., Freund, M., Iosip, A., Kreuzer, I., Saul, F., Kamida, C., Fukushima, K., Shigenobu, S., Tamada, Y., Adamec, L., Hoshi, Y., Ueda, K., Winkelmann, T., Fuchs, J., Schubert, I., Schwacke, R., Al-Rasheid, K., Schultz, J., Hasebe, M., & Hedrich, R. Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory. Current Biology, 30(12), 2312 - 2320.e5. https://doi.org/https://doi.org/10.1016/j.cub.2020.04.051
    • Winkelm{\"u}ller, T. M., Entila, F., Anver, S., Piasecka, A., Song, B., Dahms, E., Sakakibara, H., Gan, X., Ku{\l}ak, K., Sawikowska, A., Krajewski, P., Tsiantis, M., Garrido-Oter, R., Fukushima, K., Schulze-Lefert, P., Laurent, S., Bednarek, P., & Tsuda, K. Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species. BioRxiv. https://doi.org/10.1101/2020.07.29.227397
    2019[ to top ]
    • Zhang, Y., Zheng, L., Zheng, Y., Zhou, C., Huang, P., Xiao, X., Zhao, Y., Hao, X., Hu, Z., Chen, Q., Li, H., Wang, X., Fukushima, K., Wang, G., & Li, C. Assembly and annotation of a draft genome of the medicinal plant Polygonum cuspidatum. Frontiers in Plant Science, 10, 1274. https://doi.org/10.3389/fpls.2019.01274
    2018[ to top ]
    • Pollard, S., Fukushima, K., Wang, Z. O., Castoe, T. A., & Pollock, D. {Markov katana: a novel method for Bayesian resampling of parameter space applied to phylogenetic trees}. BioRxiv, 250951. https://doi.org/10.1101/250951
    • Renner, T., Lan, T., Farr, K. M., Ibarra-Laclette, E., Herrera-Esrella, L., Schuster, S. C., Hasebe, M., Fukushima, K., & Albert, V. A. {Carnivorous plant genomes}. In A. Ellison & L. Adamec (Eds.), Carnivorous plants: Physiology, ecology, and evolution (pp. 135-152). Oxford University Press. https://global.oup.com/academic/product/carnivorous-plants-9780198779841
    2017[ to top ]
    • Fukushima, K., Fang, X., Alvarez-Ponce, D., Cai, H., Carretero-Paulet, L., Chen, C., Chang, T.-H., Farr, K. M., Fujita, T., Hiwatashi, Y., Hoshi, Y., Imai, T., Kasahara, M., Librado, P., Mao, L., Mori, H., Nishiyama, T., Nozawa, M., P{\’{a}}lfalvi, G., Pollard, S. T., Rozas, J., S{\’{a}}nchez-Gracia, A., Sankoff, D., Shibata, T. F., Shigenobu, S., Sumikawa, N., Uzawa, T., Xie, M., Zheng, C., Pollock, D. D., Albert, V. A., Li, S., & Hasebe, M. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nature Ecology {\&} Evolution, 1(3), 0059. https://doi.org/10.1038/s41559-016-0059
    2015[ to top ]
    • Fukushima, K., Fujita, H., Yamaguchi, T., Kawaguchi, M., Tsukaya, H., & Hasebe, M. Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea. Nature Communications, 6(1), 6450. https://doi.org/10.1038/ncomms7450
    2014[ to top ]
    • Fukushima, K., & Hasebe, M. Adaxial–abaxial polarity: The developmental basis of leaf shape diversity. Genesis, 52(1), 1-18. https://doi.org/10.1002/dvg.22728
    • Nakayama, H., Fukushima, K., Fukuda, T., Yokoyama, J., & Kimura, S. Molecular phylogeny determined using chloroplast DNA inferred a new phylogenetic relationship of Rorippa aquatica (Eaton) EJ Palmer & Steyermark (Brassicaceae)—lake cress. American Journal of Plant Sciences, 05(01), 48-54. https://doi.org/10.4236/ajps.2014.51008
    2011[ to top ]
    • Fukushima, K., Imamura, K., Nagano, K., & Hoshi, Y. Contrasting patterns of the 5S and 45S rDNA evolutions in the Byblis liniflora complex (Byblidaceae). Journal of Plant Research, 124(2), 231-244. https://doi.org/10.1007/s10265-010-0366-x
    2009[ to top ]
    • Fukushima, K., Nagai, K., Hoshi, Y., Masumoto, S., Mikami, I., Takahashi, Y., Oike, H., & Kobori, M. Drosera rotundifolia and Drosera tokaiensis suppress the activation of HMC-1 human mast cells. Journal of Ethnopharmacology, 125(1), 90-96. https://doi.org/10.1016/j.jep.2009.06.009
    2008[ to top ]
    • Hoshi, Y., Shirakawa, J., Hasebe, M., Fukushima, K., & Kondo, K. {Tandem repeat rDNA sequences derived from parents were stably maintained in hexaploids of Drosera spathulata complex (Droseraceae)}. Cytologia, 73(3), 313-325. https://doi.org/10.1508/cytologia.73.313
    • Fukushima, K., Nagano, K., & Hoshi, Y. Somatic chromosome differentiation in three species of the Byblis liniflora complex (Byblidaceae). Chromosome Botany, 3(3/4), 95-99. https://doi.org/10.3199/iscb.3.95
    • Kobori, M., Nakayama, H., Fukushima, K., Ohnishi-Kameyama, M., Ono, H., Fukushima, T., Akimoto, Y., Masumoto, S., Yukizaki, C., Hoshi, Y., Deguchi, T., & Yoshida, M. {Bitter gourd suppresses lipopolysaccharide-induced inflammatory responses}. Journal of Agricultural and Food Chemistry, 56(11), 4004-4011. https://doi.org/10.1021/jf800052y
    2007[ to top ]
    • Hoshi, Y., Fukushima, K., & Nagano, K. A comparative study of karyotypes in two species of Byblis (Byblidaceae). Chromosome Botany, 2(1), 39-43. https://doi.org/10.3199/iscb.2.39