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    Department of Botany I - Plant-Physiology and Biophysics

    Publications

    Publications Dr. Kenji Fukushima

    [ 2021 ] [ 2020 ] [ 2019 ] [ 2018 ] [ 2017 ] [ 2015 ] [ 2014 ] [ 2011 ] [ 2009 ] [ 2008 ] [ 2007 ]

    2021 [ to top ]

    • Winkelmüller, T.M., Entila, F., Anver, S., Piasecka, A., Song, B., Dahms, E., Sakakibara, H., Gan, X., Kułak, K., Sawikowska, A., Krajewski, P., Tsiantis, M., Garrido-Oter, R., Fukushima, K., Schulze-Lefert, P., Laurent, S., Bednarek, P., Tsuda, K. (2021) ‘Gene expression evolution in pattern-triggered immunity within <i>Arabidopsis thaliana</i> and across Brassicaceae species’, The Plant Cell, 33, 1863–1887.
       
    • Fukushima, K., Narukawa, H., Palfalvi, G., Hasebe, M. (2021) ‘A discordance of seasonally covarying cues uncovers misregulated phenotypes in the heterophyllous pitcher plant Cephalotus follicularis’, Proceedings of the Royal Society B, 288(1943), 10.1098/rspb.2020.2568, available: https://royalsocietypublishing.org/doi/10.1098/rspb.2020.2568.
       
    • Hedrich, R., Fukushima, K. (2021) ‘On the origin of carnivory: Molecular physiology and evolution of plants on an animal diet’, Annual Review of Plant Biology, 72, 133–153, available: https://www.annualreviews.org/doi/10.1146/annurev-arplant-080620-010429.
       

    2020 [ to top ]

    • Suda, H., Mano, H., Toyota, M., Fukushima, K., Mimura, T., Tsutsui, I., Hedrich, R., Tamada, Y., Hasebe, M. (2020) ‘Calcium dynamics during trap closure visualized in transgenic Venus flytrap’, Nature Plants, 6(10), 1219–1224, available: https://doi.org/10.1038/s41477-020-00773-1.
       
    • Fukushima, K., Pollock, D.D. (2020) ‘Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution’, Nature Communications, 11(1), 4459-, available: https://doi.org/10.1038/s41467-020-18090-8.
       
    • Dreyer, I., Sussmilch, F.C., Fukushima, K., Riadi, G., Becker, D., Schultz, J., Hedrich, R. (2020) ‘How to Grow a Tree: Plant Voltage-Dependent Cation Channels in the Spotlight of Evolution’, Trends in Plant Science, available: http://www.sciencedirect.com/science/article/pii/S1360138520302417.
       
    • Palfalvi, G., Hackl, T., Terhoeven, N., Shibata, T.F., Nishiyama, T., Ankenbrand, M., Becker, D., Förster, F., Freund, M., Iosip, A., Kreuzer, I., Saul, F., Kamida, C., Fukushima, K., Shigenobu, S., Tamada, Y., Adamec, L., Hoshi, Y., Ueda, K., Winkelmann, T., Fuchs, J., Schubert, I., Schwacke, R., Al-Rasheid, K., Schultz, J., Hasebe, M., Hedrich, R. (2020) ‘Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory’, Current Biology, 30(12), 2312 – 2320.e5, available: http://www.sciencedirect.com/science/article/pii/S0960982220305674.
       
    • Winkelmüller, T.M., Entila, F., Anver, S., Piasecka, A., Song, B., Dahms, E., Sakakibara, H., Gan, X., Kulak, K., Sawikowska, A., Krajewski, P., Tsiantis, M., Garrido-Oter, R., Fukushima, K., Schulze-Lefert, P., Laurent, S., Bednarek, P., Tsuda, K. (2020) ‘Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species’, bioRxiv, available: https://www.biorxiv.org/content/early/2020/08/05/2020.07.29.227397.
       

    2019 [ to top ]

    • Zhang, Y., Zheng, L., Zheng, Y., Zhou, C., Huang, P., Xiao, X., Zhao, Y., Hao, X., Hu, Z., Chen, Q., Li, H., Wang, X., Fukushima, K., Wang, G., Li, C. (2019) ‘Assembly and annotation of a draft genome of the medicinal plant Polygonum cuspidatum’, Frontiers in Plant Science, 10, 1274, available: https://www.frontiersin.org/articles/10.3389/fpls.2019.01274/full.
       

    2018 [ to top ]

    • Pollard, S., Fukushima, K., Wang, Z.O., Castoe, T.A., Pollock, D. (2018) ‘Markov katana: a novel method for Bayesian resampling of parameter space applied to phylogenetic trees’, bioRxiv, 250951, available: https://www.biorxiv.org/content/early/2018/01/24/250951.
       
    • Renner, T., Lan, T., Farr, K.M., Ibarra-Laclette, E., Herrera-Esrella, L., Schuster, S.C., Hasebe, M., Fukushima, K., Albert, V.A. (2018) ‘Carnivorous plant genomes’, in Ellison, A. and Adamec, L., eds., Carnivorous Plants: Physiology, Ecology, and Evolution, Oxford University Press, 135–152, available: https://global.oup.com/academic/product/carnivorous-plants-9780198779841.
       

    2017 [ to top ]

    • Fukushima, K., Fang, X., Alvarez-Ponce, D., Cai, H., Carretero-Paulet, L., Chen, C., Chang, T.-H., Farr, K.M., Fujita, T., Hiwatashi, Y., Hoshi, Y., Imai, T., Kasahara, M., Librado, P., Mao, L., Mori, H., Nishiyama, T., Nozawa, M., Pálfalvi, G., Pollard, S.T., Rozas, J., Sánchez-Gracia, A., Sankoff, D., Shibata, T.F., Shigenobu, S., Sumikawa, N., Uzawa, T., Xie, M., Zheng, C., Pollock, D.D., Albert, V.A., Li, S., Hasebe, M. (2017) ‘Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory’, Nature Ecology & Evolution, 1(3), 0059, available: http://www.nature.com/articles/s41559-016-0059.
       

    2015 [ to top ]

    • Fukushima, K., Fujita, H., Yamaguchi, T., Kawaguchi, M., Tsukaya, H., Hasebe, M. (2015) ‘Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea’, Nature Communications, 6(1), 6450, available: http://www.nature.com/articles/ncomms7450.
       

    2014 [ to top ]

    • Nakayama, H., Fukushima, K., Fukuda, T., Yokoyama, J., Kimura, S. (2014) ‘Molecular phylogeny determined using chloroplast DNA inferred a new phylogenetic relationship of Rorippa aquatica (Eaton) EJ Palmer & Steyermark (Brassicaceae)—lake cress’, American Journal of Plant Sciences, 05(01), 48–54, available: http://www.scirp.org/journal/doi.aspx?DOI=10.4236/ajps.2014.51008.
       
    • Fukushima, K., Hasebe, M. (2014) ‘Adaxial–abaxial polarity: The developmental basis of leaf shape diversity’, genesis, 52(1), 1–18, available: https://onlinelibrary.wiley.com/doi/abs/10.1002/dvg.22728.
       

    2011 [ to top ]

    • Fukushima, K., Imamura, K., Nagano, K., Hoshi, Y. (2011) ‘Contrasting patterns of the 5S and 45S rDNA evolutions in the Byblis liniflora complex (Byblidaceae)’, Journal of Plant Research, 124(2), 231–244, available: http://link.springer.com/10.1007/s10265-010-0366-x.
       

    2009 [ to top ]

    • Fukushima, K., Nagai, K., Hoshi, Y., Masumoto, S., Mikami, I., Takahashi, Y., Oike, H., Kobori, M. (2009) ‘Drosera rotundifolia and Drosera tokaiensis suppress the activation of HMC-1 human mast cells’, Journal of Ethnopharmacology, 125(1), 90–96, available: http://www.sciencedirect.com/science/article/pii/S0378874109003717.
       

    2008 [ to top ]

    • Hoshi, Y., Shirakawa, J., Hasebe, M., Fukushima, K., Kondo, K. (2008) ‘Tandem repeat rDNA sequences derived from parents were stably maintained in hexaploids of Drosera spathulata complex (Droseraceae)’, Cytologia, 73(3), 313–325, available: http://joi.jlc.jst.go.jp/JST.JSTAGE/cytologia/73.313.
       
    • Fukushima, K., Nagano, K., Hoshi, Y. (2008) ‘Somatic chromosome differentiation in three species of the Byblis liniflora complex (Byblidaceae)’, Chromosome Botany, 3(3/4), 95–99, available: http://joi.jlc.jst.go.jp/JST.JSTAGE/iscb/3.95.
       
    • Kobori, M., Nakayama, H., Fukushima, K., Ohnishi-Kameyama, M., Ono, H., Fukushima, T., Akimoto, Y., Masumoto, S., Yukizaki, C., Hoshi, Y., Deguchi, T., Yoshida, M. (2008) ‘Bitter gourd suppresses lipopolysaccharide-induced inflammatory responses’, Journal of Agricultural and Food Chemistry, 56(11), 4004–4011, available: http://pubs.acs.org/doi/abs/10.1021/jf800052y.
       

    2007 [ to top ]

    • Hoshi, Y., Fukushima, K., Nagano, K. (2007) ‘A comparative study of karyotypes in two species of Byblis (Byblidaceae)’, Chromosome Botany, 2(1), 39–43, available: http://joi.jlc.jst.go.jp/JST.JSTAGE/iscb/2.39.